Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L24
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    88   2e-18
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    27   3.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   4.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   4.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   8.5  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 43/113 (38%), Positives = 68/113 (60%)
 Frame = +3

Query: 174 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 353
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD + +G V+S++   
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANL-- 63

Query: 354 GIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLXXGG 512
           G    R  AL AG+P+      +N++C SG ++ +  AQ I+TG  + +  GG
Sbjct: 64  GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGG 116


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 QFKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATV 269
           Q+K + I  A  TP G    V RNT A  L  I+T+
Sbjct: 340 QYKNVDISMAVATPSGLITPVIRNTHALGLAEISTL 375


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 201 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMV 320
           P G  G    + + T+ Q I  +  L    V PAQ+DS++
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSIM 309


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 473 VLSAVHDRLE-TRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL 345
           +   V + ++ T+ + + ++   LLL N+  + +++W +D+V L
Sbjct: 185 IFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVEL 228


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = +2

Query: 206  WYLRRSLPQHIRDRTA--DDSHCRCAEGGRSVPGSGRQHGRGPSHLFITN*RNLHAT--S 373
            +Y    L  + +  TA  D +    +E  R + G    HG    ++ I N   L      
Sbjct: 753  YYSENLLGAYSKQTTAIYDKTAVHYSENFRKLCGLLVLHGTSDDNVHIENTMQLTKAMVE 812

Query: 374  RGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRA 487
            +G  ++Y      A H+ +    +   RE+ SGHF  A
Sbjct: 813  KGVYNYYPFIVPNANHEFSDPTDYTFLREKLSGHFHHA 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,796
Number of Sequences: 5004
Number of extensions: 36585
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)