Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L24
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 79 4e-15
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 79 5e-15
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 60 3e-09
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 56 4e-08
02_05_0052 - 25433204-25434151 34 0.18
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 31 0.95
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 30 2.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.8
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 5.1
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 79.4 bits (187), Expect = 4e-15
Identities = 44/122 (36%), Positives = 68/122 (55%)
Frame = +3
Query: 147 ESCLLQFKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVG 326
+S LL+ + + IVG RTP G G + AT+L ++A AL+ A V PA V + +G
Sbjct: 8 DSDLLKPRDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMG 67
Query: 327 QVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLXX 506
V+S++ G R AAL AG+P P +N++C SG ++++ +AQ I G +
Sbjct: 68 NVLSANL--GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVA 125
Query: 507 GG 512
GG
Sbjct: 126 GG 127
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 79.0 bits (186), Expect = 5e-15
Identities = 45/115 (39%), Positives = 63/115 (54%)
Frame = +3
Query: 168 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 347
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V + G V+S++
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGNVLSANL 68
Query: 348 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLXXGG 512
G R AAL AGIP +N++C SG ++ + +AQ IL G + GG
Sbjct: 69 --GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGG 121
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 59.7 bits (138), Expect = 3e-09
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +3
Query: 174 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQT 350
+ +V A RTP G F++T +L T+ L ++P ++ +VVG V+
Sbjct: 49 VVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPGSQ 108
Query: 351 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTG 485
I R AA AG+P+ PV +NR C SG Q++ + A I G
Sbjct: 109 RAIEC-RAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAG 152
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 56.0 bits (129), Expect = 4e-08
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +3
Query: 174 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQT 350
+ IV A RT + G F++T A +L + + ++P++V +VVG V++
Sbjct: 51 VVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGSQ 110
Query: 351 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTG 485
I R AA AG P P++ +NR C SG Q++ N A +I G
Sbjct: 111 RAIEC-RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAG 154
>02_05_0052 - 25433204-25434151
Length = 315
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 219 GVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTP 368
G+F N ++ ELQ I +G + G+SP Q +V G +S T G TP
Sbjct: 239 GLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAGFAYEASTTMGRDTP 286
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 31.5 bits (68), Expect = 0.95
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -3
Query: 470 LSAVHDRLETRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL**RDDLAHDHAVDLSRGH 291
++ H+RL+ +++ + +N++F+RR+ W +D D + H D+ G
Sbjct: 109 IAEAHERLKVDNVDALNCYYAHADKNSTFQRRIYWMLDPA----YDHIVFVHYRDVQEGS 164
Query: 290 SGLLQRTDSGYRLQFGRGCVAE 225
+ DS Q G G AE
Sbjct: 165 ISVSALNDSSTSNQNGSGSRAE 186
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 234 TSATELQTIATVGALKEAGV--SPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEK 407
T A L +A + A AG SP S V + S + P+H L A Q
Sbjct: 10 TVAGLLVAVAAIMAASPAGAQPSPGYYPSSVHRAMAFSRDYTNKWGPQHQTLSAD--QSS 67
Query: 408 PVLGINRLCGSGFQS 452
+ +++ CGSGF+S
Sbjct: 68 LTIWLDKTCGSGFKS 82
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 492 GCARSKCPERCSR 454
GC R KCPERC R
Sbjct: 368 GCGRHKCPERCHR 380
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 366 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 482
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,733
Number of Sequences: 37544
Number of extensions: 319316
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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