Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L24
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical p...   122   3e-28
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    80   2e-15
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    72   7e-13
U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical pr...    71   1e-12
M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...    56   3e-08

>Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical
           protein F53A2.7 protein.
          Length = 394

 Score =  122 bits (295), Expect = 3e-28
 Identities = 60/115 (52%), Positives = 77/115 (66%)
 Frame = +3

Query: 168 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 347
           K +FIVGAKRT FGTFGG  +  SAT+L  +A+  ALK A V    VD ++ G V++SS+
Sbjct: 4   KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR 63

Query: 348 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLXXGG 512
            DGIY  RH  LK+G+PQ    L +NRLCGSGFQ++VN+AQ I  G    +  GG
Sbjct: 64  -DGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGG 117


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/130 (36%), Positives = 68/130 (52%)
 Frame = +3

Query: 150 SCLLQFKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 329
           S  L  K  FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +  + +GQ
Sbjct: 16  SAALSNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQ 75

Query: 330 VISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLXXG 509
           V  ++   G    R AAL AG+     V  +N++C SG ++I+ +AQ I TG  Q    G
Sbjct: 76  VCQANA--GQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGH-QDFAIG 132

Query: 510 GEXXTCXQPP 539
           G   +  Q P
Sbjct: 133 GGMESMSQVP 142


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 34/106 (32%), Positives = 60/106 (56%)
 Frame = +3

Query: 168 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 347
           K +FI+   RTP G + G F N  A EL T+A   A++ +GV+P +++ ++ G V+ +  
Sbjct: 4   KKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLPAGL 63

Query: 348 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTG 485
             G    R  +L AG+P     + +N++C S  +++V +A +I  G
Sbjct: 64  --GQNVTRQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAG 107


>U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical
           protein T02G5.4 protein.
          Length = 460

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
 Frame = +3

Query: 150 SCLLQFKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD--SMVV 323
           S  L  K  FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +   ++ +
Sbjct: 94  SAALSNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFL 153

Query: 324 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLX 503
           GQV  ++   G  + R AAL AG+     V  +N+   SG ++I+ +AQ I TG  Q L 
Sbjct: 154 GQVCHANA--GQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGH-QDLA 210

Query: 504 XGGEXXTCXQPP 539
            GG   +  Q P
Sbjct: 211 IGGGMESMSQVP 222


>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 35/113 (30%), Positives = 54/113 (47%)
 Frame = +3

Query: 174 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 353
           I +V A RTPF   G VF++  A +LQ  A    +++  +   Q+D ++ G VI   +T 
Sbjct: 26  IVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGTVIQECKTS 85

Query: 354 GIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGRXQXLXXGG 512
            I   R AAL AG+P + P   +   C S   ++      + TG    +  GG
Sbjct: 86  NI--AREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAIIAGG 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,603
Number of Sequences: 27780
Number of extensions: 230453
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)