Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L24
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    29   0.044
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.7  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   8.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 29.5 bits (63), Expect = 0.044
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 489 CARSKCPERCSRSIGNQSRIVC*CRAPASLEEYQL*APRDVA 364
           C R+K  E+  R +  ++ + C CR   S+EEY +  P+++A
Sbjct: 92  CPRAKPGEKKFRKVITKAPLECMCRPCTSVEEYAI-IPQEIA 132


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 262  AIVCSSVADVLRKTPPKVPNGVLLAPTM 179
            A+V SS + ++   PP  PNGV+   T+
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTV 1215


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 LRSTAWSWAKSSLHHKLTESTRHVTRRS 384
           LRS + S+ ++S  H   E +RH  R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 LRSTAWSWAKSSLHHKLTESTRHVTRRS 384
           LRS + S+ ++S  H   E +RH  R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 LRSTAWSWAKSSLHHKLTESTRHVTRRS 384
           LRS + S+ ++S  H   E +RH  R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 LRSTAWSWAKSSLHHKLTESTRHVTRRS 384
           LRS + S+ ++S  H   E +RH  R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 LRSTAWSWAKSSLHHKLTESTRHVTRRS 384
           LRS + S+ ++S  H   E +RH  R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 356 NLHATSRGAQSWYSSREAGARHQQ 427
           +LH T    + W+ +R A A+  Q
Sbjct: 45  SLHLTETQVKIWFQNRRAKAKRLQ 68


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 284 GRSVPGSGRQH 316
           G S PG+GR+H
Sbjct: 392 GSSTPGTGREH 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,827
Number of Sequences: 438
Number of extensions: 2892
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)