Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L21
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 280 2e-76
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 215 7e-57
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 118 9e-28
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 104 2e-23
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 49 1e-06
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 48 2e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 42 1e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 42 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 5e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 39 9e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 39 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 38 0.003
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.005
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 37 0.005
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 36 0.008
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 36 0.011
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.043
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 33 0.056
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.074
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 32 0.13
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 28 2.1
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 2.8
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.7
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 6.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 6.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 280 bits (686), Expect = 2e-76
Identities = 132/151 (87%), Positives = 141/151 (93%)
Frame = +1
Query: 145 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 324
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 325 ISFTVWDVGGQDKIRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAV 504
ISFTVWDVGGQDKIRPLWRHYF NTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 505 LXIFANKQDLPNAMNAAEITDKLGLHSLRNR 597
L +FANKQDLPNAMNAAEITDKLGLHSLR+R
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/27 (77%), Positives = 21/27 (77%)
Frame = +2
Query: 602 WYIQATCATSGXGLYXGLXWLSNQXKN 682
WYIQATCATSG GLY GL WLS KN
Sbjct: 153 WYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 215 bits (525), Expect = 7e-57
Identities = 101/147 (68%), Positives = 118/147 (80%)
Frame = +1
Query: 157 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 336
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 337 VWDVGGQDKIRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLXIF 516
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +L +
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 517 ANKQDLPNAMNAAEITDKLGLHSLRNR 597
ANKQDLP A++ A+ITD L L L++R
Sbjct: 129 ANKQDLPGALSPAQITDVLQLDKLKDR 155
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 602 WYIQATCATSGXGLYXGLXWLSNQXK 679
W +Q TCA +G GL GL WLS K
Sbjct: 157 WNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 118 bits (285), Expect = 9e-28
Identities = 56/137 (40%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Frame = +1
Query: 187 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 363
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 364 IRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLXIFANKQDLPNA 543
+R W++YF +T+ +I+VVDS D R+ E R L +L E++L + + ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 544 MNAAEITDKLGLHSLRN 594
+++ EI+ L + ++
Sbjct: 133 LSSEEISKILNISKYKS 149
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 104 bits (249), Expect = 2e-23
Identities = 51/141 (36%), Positives = 79/141 (56%)
Frame = +1
Query: 190 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 369
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 370 PLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLXIFANKQDLPNAMN 549
LWR YF G++++VD D ER+ E++ EL +L+ +EL I NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 550 AAEITDKLGLHSLRNRXLVHP 612
E+ LGL+ + + P
Sbjct: 139 EDELKAALGLYQTTGKGVSKP 159
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 48.8 bits (111), Expect = 1e-06
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 196 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 360
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 361 KIRPLWRHYFXNTQGLIFVVDSNDRERIGEAR 456
+ R + Y+ G++ + D D++ R
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 363
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 364 IRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRM 474
R + Y+ G+I V D D++ ++ L +
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 41.9 bits (94), Expect = 1e-04
Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Frame = +1
Query: 181 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 345
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 346 VGGQDKIRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLXIFANK 525
GQ++ R L Y ++ I V D + E+ + + + D ++ + NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 526 QDLPNAMNAAEITDKLGLHSLRNRXLVH 609
DL + ++T + G + ++H
Sbjct: 126 TDL---ADKRQVTQEEGEKKAKELKIMH 150
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 363
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 364 IRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLXIFANKQDL 534
R + Y+ G + V D + L + L E + V+ + NK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.9 bits (89), Expect = 5e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 363
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 364 IRPLWRHYFXNTQGLIFVVDSNDR 435
+ L Y+ Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.1 bits (87), Expect = 9e-04
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 360
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 361 KIRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLXIFANKQDLPN 540
+ + L Y+ N I V D + +A+ ++ L V+ + NK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDLAQ 134
Query: 541 AMNAAEITD 567
A E D
Sbjct: 135 ERRAVEKAD 143
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 313 EYKNISFTVWDVGGQDKIRPLWRHYFXNTQGLIFVVDSNDRERIGEAREELMRMLSE 483
+ K I +WD GQ+K R + R+Y+ G + V D +++ EEL LS+
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSF----EELSSWLSD 110
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 286 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFXNTQGLIFVVDSNDRER--IGEARE 459
T+G + + ++ ++DVGGQ R W + F N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 460 ELMRMLSEDELRDAVL 507
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +1
Query: 196 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 360
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 361 KIRPLWRHYFXNTQGLIFVVDSNDRERIGEARE 459
+ + + ++F+ D + + + +E
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 36.7 bits (81), Expect = 0.005
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 366
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 367 RPLWRHYFXNTQGLI--FVVDSND 432
L + ++ F +DS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 280 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFXNTQGLIFVV 420
I T G + ET + +DVGGQ R W H F N L+F+V
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 184 GKKEMRILMVGLDAAGKTTILYKLKL 261
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 35.5 bits (78), Expect = 0.011
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Frame = +1
Query: 184 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 342
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 343 DVGGQDKIRPLWRHYFXNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVLXI 513
D GQ++ + L ++ + V D N+ E + R+E + S +
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 514 FANKQDL 534
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.043
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 357
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 358 DKIRPL 375
D++RPL
Sbjct: 68 DRLRPL 73
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.1 bits (72), Expect = 0.056
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 360
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 361 KIRPLW-----RHYFXNTQGLIFVVDSNDRE 438
+ H F N Q LI+V D RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 32.7 bits (71), Expect = 0.074
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +1
Query: 199 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 366
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 367 RPLWRHYFXNTQGLI--FVVDSND 432
L + +T ++ F VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Frame = +1
Query: 196 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 360
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 361 KIRPLWRHYFXNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 489
+ + L ++ + V + N+ + + R+E + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 311 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 132
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 131 EYNF 120
+ F
Sbjct: 248 IHVF 251
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.9 bits (59), Expect = 2.1
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Frame = +1
Query: 187 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 366
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 367 RPLWRHYF---XNTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LXIFANKQD 531
+ F N + ++FV++S +R + E L + + L I NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 532 LPNAMNAAEITD--KLGLHSL 588
L A A +I K LH++
Sbjct: 152 LFTAQPAEKIQQLLKAELHNI 172
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 181 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 345
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 569 NWVCIRCATXNWYIQ-ATCATSGXGLY 646
NW+ + + WYIQ A C TSG Y
Sbjct: 177 NWMLLPISANPWYIQVAFCVTSGFFSY 203
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 202 ILMVGLDAAGKTTILYKLKL 261
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 190 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 291
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 166 LFKGLFGKKEMRILMVGLDAAGKTTI 243
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 381 PPQWSDFVLASNIPHSKTNVFVFY 310
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,867
Number of Sequences: 5004
Number of extensions: 58569
Number of successful extensions: 221
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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