Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L20
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    93   5e-20
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    93   5e-20
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   4.6  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.1  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   8.1  

>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 43/91 (47%), Positives = 61/91 (67%)
 Frame = +1

Query: 232 KVLSCASSTLYCLAPVIKILEDNYGVSEGFVTSIHAMTPSLKPLDGLCLRGKHWRDHRSI 411
           KV+S AS T  CLAP+ K++ D +G+ EG +T++HA T + K +DG     K WR  R  
Sbjct: 145 KVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDG--PSKKDWRGGRGA 202

Query: 412 HQNIIPAATGACKALGKIMPQVKDKLTGFSF 504
             NIIP++TGA KA+GK++P +  KLTG +F
Sbjct: 203 SANIIPSSTGAAKAVGKVIPALNGKLTGMAF 233



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 26/61 (42%), Positives = 40/61 (65%)
 Frame = +2

Query: 497 LAFRVPIVNVSVLDISIRLCKETTWQDILKKIEEAGRXKMENIIRVTRDDNVSSDFAGDE 676
           +AFRVP  +VSV+D++++L K T ++DI   I+ A    M+ ++  T D  VS+DF GD 
Sbjct: 231 MAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDN 290

Query: 677 H 679
           H
Sbjct: 291 H 291


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 43/91 (47%), Positives = 61/91 (67%)
 Frame = +1

Query: 232 KVLSCASSTLYCLAPVIKILEDNYGVSEGFVTSIHAMTPSLKPLDGLCLRGKHWRDHRSI 411
           KV+S AS T  CLAP+ K++ D +G+ EG +T++HA T + K +DG     K WR  R  
Sbjct: 145 KVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDG--PSKKDWRGGRGA 202

Query: 412 HQNIIPAATGACKALGKIMPQVKDKLTGFSF 504
             NIIP++TGA KA+GK++P +  KLTG +F
Sbjct: 203 SANIIPSSTGAAKAVGKVIPALNGKLTGMAF 233



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 26/61 (42%), Positives = 40/61 (65%)
 Frame = +2

Query: 497 LAFRVPIVNVSVLDISIRLCKETTWQDILKKIEEAGRXKMENIIRVTRDDNVSSDFAGDE 676
           +AFRVP  +VSV+D++++L K T ++DI   I+ A    M+ ++  T D  VS+DF GD 
Sbjct: 231 MAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDN 290

Query: 677 H 679
           H
Sbjct: 291 H 291


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 355 KPLDGLCLRGKHWRDHRSIHQNIIPAATGACKALGKIMP-QVKDKLTGF-SFSSTDC 519
           KPL    L       H S+ QN+I   T  C  L  ++P  V  +L G  S SS+ C
Sbjct: 64  KPLGLFVLDTNFLLSHLSLCQNLIEFLTARCPRLVVVLPWTVLQELDGLKSESSSTC 120


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 144 YSVFAELYLDIIKTNYSYILHFSFQRTPHESFVVC 248
           YS F  +Y +   ++Y Y  H  F  T H  + +C
Sbjct: 213 YSQFLFVYRESFLSDYYYNFHDGFYCTEHLIYAIC 247


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 202 YIFRSNEHHMKVLSCASSTLYCLAPVIKILEDN-YGVSEGFVTSIHAMTPSLKPL 363
           +I R  EH   V S  S  + CL+    + +D     S   + ++H  T  L PL
Sbjct: 175 FILRELEHQQMVSSNVSRPIICLSMAWLVSDDKVIDASLPDIKNLHYWTTRLSPL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,389
Number of Sequences: 5004
Number of extensions: 68803
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)