Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L18
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1284 + 27548813-27549826 29 3.7
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 29 3.7
02_03_0328 - 17776141-17776755,17776952-17777149,17777545-17778006 29 3.7
01_05_0655 - 23972488-23973152,23973193-23973241,23973883-239739... 29 3.7
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 29 4.9
12_02_0887 + 24018847-24019281 29 6.5
06_02_0282 + 13720419-13720985 29 6.5
01_07_0260 - 42364769-42364777,42364884-42365354 29 6.5
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 28 8.6
04_04_0900 + 29232365-29232931 28 8.6
>12_02_1284 + 27548813-27549826
Length = 337
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 247 GYARLSGRES-SRRVTSVARPVQRPSDVAGRRRPFAPGPTRPQ 122
G RL R S SRR + + P QRP +A R R + G T+ Q
Sbjct: 13 GLHRLISRSSCSRRTFAASTPPQRPRAIAVRVRSSSAGVTKSQ 55
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 253 HYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPFAPGPTRPQ 122
H Y L GR+++ R S P P D A P AP P PQ
Sbjct: 135 HRRYIILPGRQAASRAPSPPAPPSPPQDPA-PSLPHAPAPPPPQ 177
>02_03_0328 - 17776141-17776755,17776952-17777149,17777545-17778006
Length = 424
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 166 AGRRRPFAPGPTRPQPHVG-AVRVARGXPWHSPAALPE 56
A RRR PGPT P P VG + V+R P S A L E
Sbjct: 27 AARRRRLPPGPT-PLPLVGNLLSVSRSGPHRSLARLAE 63
>01_05_0655 -
23972488-23973152,23973193-23973241,23973883-23973940,
23974184-23974215,23975961-23976040,23976509-23977898
Length = 757
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 157 RRPFAPGPTRPQPHVGAVRVARGXPWH 77
+RP GP+ PH G +A PWH
Sbjct: 474 KRPRRSGPSHAPPHAGPGTIAIVGPWH 500
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 160 RRRPFAP-GPTRPQPHVGAVRVARGXPWH 77
RR+P +P P+R PHV A A G P H
Sbjct: 271 RRKPSSPPAPSRSPPHVFATARAHGKPKH 299
>12_02_0887 + 24018847-24019281
Length = 144
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 220 SSRRVTSVARPVQRPSDVAGRRRPFAPGPTRPQPHVGAVRVARGXPWHSPAAL 62
S+ RV V R V RP+ V+ + RP A P Q H R + SP+A+
Sbjct: 47 SASRVAPVHRIVPRPNSVSRQVRPSAANPGIRQRHARWARDSTPVKPPSPSAV 99
>06_02_0282 + 13720419-13720985
Length = 188
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 107 RPNMWLGSRWARCERPAASSDVARP 181
R MW+GSRW RC R S +A P
Sbjct: 81 RGGMWMGSRWRRC-RFVDESAMAAP 104
>01_07_0260 - 42364769-42364777,42364884-42365354
Length = 159
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +3
Query: 54 HSGSAAGLCQGYPRATRTAPTCGWGRVGPGANGRRRPATSLGLW 185
H G C CG G V G G +RPA ++ W
Sbjct: 115 HGGGGTAGCGEDVHGGAAIAGCGAGAVDAGEEGEKRPAAAVAEW 158
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -2
Query: 250 YGYARLS-GRESSRRVTSVARPVQRPSDVAGRRRPFAPGPT-RPQPHVGAVRVARGXPWH 77
Y A++S R S + V A Q P A RR PGP +P G R + G H
Sbjct: 501 YAAAQISTSRSSQQTVGQQATNWQNPRTAASRRGSIEPGPAPKPAARRGKPRRSAGRTLH 560
>04_04_0900 + 29232365-29232931
Length = 188
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 51 WHSGSAAGLCQGYPRATRTAPTCGWGRVGPGANGRRR 161
W G C G P + R+ G GR+G +GRRR
Sbjct: 111 WRRGRGGRRCSGIPASGRS----GSGRLGKSMDGRRR 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,936
Number of Sequences: 37544
Number of extensions: 334235
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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