Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L18
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical ...    33   0.27 
AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical ...    33   0.27 
Z81568-7|CAD18874.1|  497|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical
           protein C24A1.2b protein.
          Length = 365

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 190 PVQRPSDVAGRRRPFAPGPTRPQ-PHVGAVRVARGXPWHSPAALPECQKS 44
           P   PS    RR  FAP P RP+ P V    V +  PW +    P  Q++
Sbjct: 78  PETSPSSSTTRRHAFAPPPPRPRPPTVPLPTVTQQIPWQTSTIWPWIQQA 127


>AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical
           protein C24A1.2a protein.
          Length = 420

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 190 PVQRPSDVAGRRRPFAPGPTRPQ-PHVGAVRVARGXPWHSPAALPECQKS 44
           P   PS    RR  FAP P RP+ P V    V +  PW +    P  Q++
Sbjct: 133 PETSPSSSTTRRHAFAPPPPRPRPPTVPLPTVTQQIPWQTSTIWPWIQQA 182


>Z81568-7|CAD18874.1|  497|Caenorhabditis elegans Hypothetical
           protein K08E3.5d protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 87  YPRATRTAPTCGWGRVGPGANGRRRPATSLGLWTG 191
           + R  R  PT  W ++ P   G  RP  SLG   G
Sbjct: 78  FARFLRAKPTVDWSKIEPLPEGAIRPYKSLGTSMG 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,113,790
Number of Sequences: 27780
Number of extensions: 269519
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)