Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L17
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 214 1e-56
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 214 2e-56
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 206 4e-54
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.70
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 28 2.1
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 6.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 8.6
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 214 bits (523), Expect = 1e-56
Identities = 101/178 (56%), Positives = 123/178 (69%)
Frame = +2
Query: 86 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 265
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 266 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 445
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 446 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKAVKRVAYEKKLRGSPRCVS 619
LKPGR YC VGRLS E+GWKY D+V KLE+ RK K+ Y+ KL + S
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIAS 181
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 214 bits (522), Expect = 2e-56
Identities = 101/178 (56%), Positives = 123/178 (69%)
Frame = +2
Query: 86 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 265
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 266 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 445
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 446 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKAVKRVAYEKKLRGSPRCVS 619
LKPGR YC VGRLS E+GWKY D+V KLE+ RK K+ Y+ KL + S
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIAS 181
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 206 bits (502), Expect = 4e-54
Identities = 91/160 (56%), Positives = 116/160 (72%)
Frame = +2
Query: 86 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 265
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 266 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 445
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 446 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 565
LKP R YC +GRLS E+GWKY+++V KLE+ RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 113 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNK 226
H L + AV K++ G K VV+RC+ I + +FF ++
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFFCSR 194
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -2
Query: 196 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHNETEKQXLKE 32
D+ A N + L RQ QQM T +YGL+ KAR N +KE
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRNLNSMLIVKE 179
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 378 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 292
S L AFLP+ LC +IPL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 399 GHPSYVRSLLRAFLPRSVLCGIIP 328
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,467
Number of Sequences: 5004
Number of extensions: 46571
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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