Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L16
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      29   1.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    29   1.2  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   2.7  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   8.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   8.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   8.1  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +2

Query: 467 MQFLGRYNDIIEISYLSPNPVFLKSILTICLKRFEERTIVIKEYHTVQANKWQYLATLFK 646
           MQ++GR  D +  ++ + NP  L   + + +   E++T+    +H V+  K+  L    K
Sbjct: 1   MQYVGRAFDSVTKTWNAINPSTLSGAIDVIVVEQEDKTLACSPFH-VRFGKFSLLLPSDK 59

Query: 647 RDIASYDGR 673
           +   S +G+
Sbjct: 60  KVEFSVNGQ 68


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 NILVKYKEISNKHEGTNTLGVNKYRINLINMSSTNYTTRTEGQ 331
           NI++  K +S+   GT  L + + + +L+N    N   +TEG+
Sbjct: 547 NIMLSLKFVSSMKPGTELLTIKQPKSSLLNWGLVNGYPKTEGR 589


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 395 KREFRVEKAKDPK--TEFTHSKFQLKMQFLGRYNDIIE 502
           +  FR EK+   +  +EFTH +F+L     G + +IIE
Sbjct: 337 QESFRAEKSLTRRHLSEFTHVEFELPFVNFGEFLEIIE 374


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 530 FLKSILTICLKRFEERTIVIKEYHTVQANKWQYLATLFKRDIASYDGRDI 679
           +LK+  T+  K+ + RT+ ++ Y   +  KW+  A   K +I+  D  D+
Sbjct: 400 YLKNAPTLVQKKKKRRTLPVEAYLIRKVQKWEDRAE--KLNISIADAMDV 447


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 246 PSCLLEISLYFTKMLTFDCGSD*FLCVEKLKQFCSS 139
           PS +  +    T  L+FD      +CV  L QFCSS
Sbjct: 271 PSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSS 306


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 154 TVLLKCMYLINDSTPNNINYTKLGIDLCKKC 62
           T+L  C  L+N+   N  NY    ID   KC
Sbjct: 480 TILTICKILLNNFDWNFFNYNNSAIDSYAKC 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,033
Number of Sequences: 5004
Number of extensions: 72767
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)