Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L15
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.19 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   5.4  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   5.4  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    26   7.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   9.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +3

Query: 495 GXPPPPGGGXGXXAFGGXPXXXPXXRGPGXGQGPXXGG 608
           G PP PGG  G   FGG         G G G G   GG
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 450 GXLPPPPPXXXLXXXGXPPPP 512
           G  PPPPP   +   G PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 954 PXXXXGGXXPXPPXPPGGXXXGGGXPPP 871
           P    GG  P PP PP G    G  PPP
Sbjct: 754 PAPIMGG--PPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 863 PXXGGGXPPPXXXPPGGXGGXGXXPP 940
           P  GG  PPP   PP G  G G  PP
Sbjct: 756 PIMGGPPPPP---PPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -3

Query: 927 PXPPXPPGGXXXGGGXPPPXXGXXXQGXSPP 835
           P P  PP     G   PPP  G    G  PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +1

Query: 838 GAPPLXXXPP--XGRGXPPPXXXPPGGXXG 921
           G PP    PP   G G PPP   PP    G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 456 LPPPPPXXXLXXXGXPPPPGGGXG 527
           +P PPP   +     PPPP G  G
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 459 PPPPPXXXLXXXGXPPPPGGGXGXXAFGGXPXXXPXXRGPGXGQGP 596
           PPPPP   +     P P          GG P   P     G G  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/55 (25%), Positives = 18/55 (32%)
 Frame = +3

Query: 171 PPXXXPPKXXXXXXXPXPPLGXGEXXPPXXQXGGXXGXXXXPVRXGXFCSXRRSP 335
           PP   PP+       P PP G     PP  +     G    P+      S   +P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 450 GXLPPPPPXXXLXXXGXPPPP 512
           G  PPPPP         PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 936 GXXPXPPXPPGGXXXGGGXPPPXXG 862
           G  P PP PPG        PPP  G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 459 PPPPPXXXLXXXGXPPPPGG 518
           PPPPP         PPPP G
Sbjct: 12  PPPPPGFEPPSQPPPPPPPG 31


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 907 RGGXXGG-GXXPSXXGGXXAGXEPPXXEGXXGGGXQGGXXKGGXPPG 770
           RGG  GG G      GG   G       G  GGG +GG  +GG   G
Sbjct: 140 RGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG-SRGGFRGG 185


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 149 FXFXXFFXFFXFFFFFXFXFXXFH 78
           F    FF +F FFFFF      FH
Sbjct: 69  FTIEAFFYWFFFFFFFFSHCRRFH 92


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 501 PPPPGGGXGXXA-FGGXPXXXP 563
           PPPPG   G  A FGG P   P
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGP 97


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 918 PXPPGGXXXGGGXPPPXXGXXXQGXSPPAGRGXXGGXP 805
           P PP     G    PP      QG +PP G    GG P
Sbjct: 14  PAPPQQAYGGPNYYPPQQNYPQQGYAPPQGY-PQGGYP 50


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
 Frame = +3

Query: 459  PPPPPXXXLXXXGXP--------PPPGGGXGXXAFGGXP 551
            PPPPP   L   G P        PP G   G  A  G P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNP 1920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,685
Number of Sequences: 5004
Number of extensions: 22262
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)