Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L12
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...   171   8e-43
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...   168   6e-42
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...   163   2e-40
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    30   2.1  
02_05_1245 + 35223504-35224778                                         29   3.8  
03_05_0830 + 28034179-28035492                                         29   5.0  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  

>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score =  171 bits (415), Expect = 8e-43
 Identities = 78/107 (72%), Positives = 91/107 (85%)
 Frame = +3

Query: 96  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 275
           MVAAKK KK+ ++IN++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PPLRKSEI
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60

Query: 276 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 416
           EYYA+LAK  VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107


>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score =  168 bits (408), Expect = 6e-42
 Identities = 75/108 (69%), Positives = 87/108 (80%)
 Frame = +3

Query: 99  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 278
           V A  QKK+ ++IN++L LVMKSGKY LGYK  LKTLR  K KL+I+A N PPLRKSEIE
Sbjct: 43  VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102

Query: 279 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 422
           YYA+L K  VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score =  163 bits (395), Expect = 2e-40
 Identities = 72/104 (69%), Positives = 84/104 (80%)
 Frame = +3

Query: 117 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 296
           KK  E IN++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PPLRKSEIEYYA+L 
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185

Query: 297 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 428
           K  V+H++GNN++LGTACGKYYRVC L++ DPGDSDI   LPE+
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
 Frame = +3

Query: 147 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG--VH 311
           L LV ++ +  CL  G K+ +K++R+G+  L IIA N  P+    I +  +L +     +
Sbjct: 33  LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI--DVITHVPILCEEANIPY 90

Query: 312 HYSGNNIELGTA-CGKYYRVCTLAITDPGDSDI 407
            Y  +  +L TA   K    C L +T P   ++
Sbjct: 91  VYVPSKEDLATAGTTKRPTCCVLVLTKPAKGEL 123


>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -3

Query: 835 PNDRAQRVSERGSGRAPNTQTASPRALADSL--MQKNLPHLPLNLK-HKMNA 689
           P   A + S   S  AP+T TA+  + A SL  ++ +LP LPL L  H++ A
Sbjct: 61  PRATATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAA 112


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 248
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 744 NESAN---ARGEAVXVLGALPLPRSLTRCAR 827
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,060
Number of Sequences: 37544
Number of extensions: 336922
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)