Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L10
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    22   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 487 PPPXGGGXXXXGPPPPXPP 543
           PPP   G    GPPPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 487 PPPXGGGXXXXGPPPPXPP 543
           PPP G       PPPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 487 PPPXGGGXXXXGPPPPXPP 543
           PPP  G      PPPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 472 PQXXXPPPXGGGXXXXGPPPPXP 540
           P    PPP   G     PPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 3.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 724 PPPPPQXPPXXPPXG 768
           PPPPP  PP     G
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 21.8 bits (44), Expect(2) = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 703 PXGKFXXPPPPPQXPP 750
           P G     PPPP  PP
Sbjct: 767 PPGVAGAGPPPPPPPP 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 3.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 724 PPPPPQXPPXXPP 762
           P PPP  PP  PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 20.6 bits (41), Expect(2) = 3.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 715 FXXPPPPPQXP 747
           +  PPPPP  P
Sbjct: 187 YNPPPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 487 PPPXGGGXXXXGPPPPXPP 543
           PPP  G      PPPP PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +1

Query: 490 PPXGGGXXXXG-PPPPXPPXXN 552
           PP G G      PPPP PP  N
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSN 346


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 523 PPPPXPPXXN 552
           PPPP PP  N
Sbjct: 307 PPPPPPPPSN 316



 Score = 21.8 bits (44), Expect(2) = 8.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 493 PXGGGXXXXGPPPPXPP 543
           P  G     G PPP PP
Sbjct: 295 PSSGDSANGGLPPPPPP 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,887
Number of Sequences: 5004
Number of extensions: 14136
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)