Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L09
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0392 + 21729501-21729895,21730198-21730312                       31   0.94 
02_05_0067 + 25557975-25558553                                         31   1.2  
05_03_0428 + 13899295-13899669                                         29   3.8  
11_06_0087 - 19919224-19922304                                         29   6.6  
06_02_0035 + 10816723-10819497,10819964-10820011                       29   6.6  
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378...    29   6.6  
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755...    29   6.6  
06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011     28   8.8  
01_06_0482 - 29672720-29673854,29673941-29676267                       28   8.8  

>01_05_0392 + 21729501-21729895,21730198-21730312
          Length = 169

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 154 GHGAVVEPQASR-RGAQSWRGPAPRCPSCRARCP 56
           GH  V    A+R R ++SW+ P  RC  CRA CP
Sbjct: 13  GHAGVCSVCAARIRSSRSWQ-PDLRCCICRAHCP 45


>02_05_0067 + 25557975-25558553
          Length = 192

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 396 CSPRCTARGRGGSRKHWCWRTCARRGSAPATACAP-WTGSTRA 521
           C+P  T R    SR H C   C    S P  AC+P  TGST+A
Sbjct: 40  CNPSGTLRP---SRSHSCQDCCKAGRSYPTYACSPATTGSTKA 79


>05_03_0428 + 13899295-13899669
          Length = 124

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 426 GGSRKHWCWRTCARRGSAPATAC 494
           GGSR+HW   T +R   +PA  C
Sbjct: 78  GGSRRHWTCSTSSRSCRSPAPVC 100


>11_06_0087 - 19919224-19922304
          Length = 1026

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 416 ARSRRLEEALVLEDLRASGFGPRDRLRPVDWEYACAAMEQLARLHALGFALQLQAPEQYE 595
           ARS  L     +  LR       D     DW  A A +  L  LH    +L   + +Q+ 
Sbjct: 185 ARSSELSWLARMPSLRHLSLSSVDLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWR 244

Query: 596 RLARR 610
           RL  R
Sbjct: 245 RLLPR 249


>06_02_0035 + 10816723-10819497,10819964-10820011
          Length = 940

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 136 EPQASRRGAQSWRGPAPR-CPSCRARCPS 53
           +PQA   G   W     R CP+CR+ C S
Sbjct: 362 KPQAQTHGCCGWMTATARPCPACRSDCAS 390


>05_05_0106 +
           22435192-22435614,22436880-22436968,22437617-22437814,
           22438475-22438679,22438749-22438916,22439095-22439262,
           22439344-22439534,22440776-22440879,22441285-22441298
          Length = 519

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 417 RGRGGSRKHWCWRTCARRGSAPATACAPWTG 509
           RG GGS +    RT  + GSA A+A A WTG
Sbjct: 33  RGGGGSGR----RTPGKGGSASASAAAGWTG 59


>03_05_0298 -
           22873933-22874040,22874807-22875407,22875517-22875596,
           22875685-22875816
          Length = 306

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +3

Query: 9   PLPLTI-GNSLRF*CPLG----QRARHDGHRGAGPRQLCAPRRDACGSTTAP 149
           PL L + G+S+    P+G    +R RH G RG  PR+ C   R   G    P
Sbjct: 213 PLNLKLAGHSVARFTPVGGEPEERGRHRGSRGRRPRRPCRAGRGGGGEALEP 264


>06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011
          Length = 376

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 329 EELSKLYRALEEERGVAEPERFVFPALYGARSRRLEEALVL 451
           EE  K   AL+EER   E E+F F      ++ ++EE  +L
Sbjct: 328 EERCKRAFALQEERNKLEREKFEFQKKEAEKAEKVEEERIL 368


>01_06_0482 - 29672720-29673854,29673941-29676267
          Length = 1153

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
 Frame = +2

Query: 263 KMSENVRAHAINSV-YDTELLVYEELSKLYRALEEERGVAEPERFVFPALYGARSRRLEE 439
           K    V+A ++ +V  D E  +  EL  L   L     V EPE+F  P + G RSRRL  
Sbjct: 441 KKDSMVKAVSLPTVELDGEDQLDAELEDL-GCLINSLSVVEPEQFDSPIVEGKRSRRLSC 499

Query: 440 ALVLEDLRASGFGPRDRLRPVDWEY-ACAAMEQLARLHA-LGFALQLQAPEQYERLARRV 613
             V E   ++    R R      ++ A   +  L   H+ LG      +    ERL ++ 
Sbjct: 500 VGVTEGCNSASRMIRSRSMDASSDFVASEFLNMLGIEHSPLGATSGSDSESPRERLWKQF 559

Query: 614 E 616
           E
Sbjct: 560 E 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,128
Number of Sequences: 37544
Number of extensions: 272836
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)