Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L08
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.6  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   4.8  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    29   6.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +3

Query: 783 PXXXPXXXPLVPXPAPDPXX*TKTXPPXISXGXXXPNXKPPPXPXP 920
           P   P   P+ P   P P   T   PP  S G   P   PPP   P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGM-TPRPPPPPSSGMWPPPPPPPPGRTP 308


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +3

Query: 783 PXXXPXXXPLVPXPAPDPXX*TKTXPPXISXGXXXPNXKPPPXPXP 920
           P   P   P+ P   P P   T   PP  S G   P   PPP   P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGM-TPRPPPPPSSGMWPPPPPPPPGRTP 318


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
 Frame = +3

Query: 726 PQKSTXXXXRXDPXETXXXPXXXPXXXPLVPXPAPDPXX*TK-----TXPPXIS-XGXXX 887
           P+ +        P +T   P   P     VP PAP P    +       PP  S      
Sbjct: 33  PKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAV 92

Query: 888 PNXKPPPXPXPXXGXP 935
           P   PPP P P    P
Sbjct: 93  PVPAPPPAPYPQHAVP 108



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +3

Query: 762 PXETXXXPXXXPXXXPLVPXPAPDPXX*TKTXPPXISXGXXXPNXKPPPXPXP 920
           P      P   P   P    PAP P       PP        P   PPP P P
Sbjct: 103 PQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +3

Query: 771 TXXXPXXXPXXXPLVPXPAPDPXX*TKTXPPXISXGXXX-PNXKPPPXPXPXXGXP 935
           T   P   P      P P+P P   +K+ PP         P+  PPP P P    P
Sbjct: 468 TTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +3

Query: 783 PXXXPXXXPLVPXPAPDPXX*TKTXPPXISXGXXXPNXKPPPXPXP 920
           P   P   P  P P PDP    K  P         P  KP P P P
Sbjct: 167 PKPKPKPEPK-PKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEP 211



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +3

Query: 783 PXXXPXXXPLVPXPAPDPXX*TKTXPPXISXGXXXPNXKPPPXPXP 920
           P   P   P  P P P P    K  P         PN KP P P P
Sbjct: 201 PEPKPKPKP-EPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKP 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,142
Number of Sequences: 27780
Number of extensions: 129996
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)