Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L06
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    40   4e-04
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    31   0.19 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   1.3  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   3.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   5.4  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   7.2  

>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +1

Query: 517 STELKNALRSIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRTFIEATKQEVKNMK 687
           +TEL  A+  +   L+DL+  + I  KNS  F +D +E+  RR F+     E+ N++
Sbjct: 38  NTELTYAIDELSETLKDLKAAVEIAMKNSEHFGLDEEELKSRRRFVSELDIELNNIQ 94


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 231 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQY 142
           +L P C    R +FW C F + R  + AQY
Sbjct: 63  VLNPYCHVDLRARFWICPFCFQRNPLPAQY 92


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 231 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAVCN 127
           +L P C    R +FW C F   R  +  QY  + N
Sbjct: 63  VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 213 LPSFRVQFWFCHFFYSRTCIAAQYI 139
           + S  +  WFC FF+   CI+A YI
Sbjct: 304 IQSIHLGLWFC-FFFLTACISALYI 327


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +1

Query: 475  KTPIIASSPEVEWTSTELKNALRSIEWDLED 567
            +TP++A+     W  T          WD ED
Sbjct: 924  QTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 445 GLYLRWQEICKTPIIASSP---EVEWTSTE 525
           GLYL W+   KT +++SS    E +W S E
Sbjct: 471 GLYLIWKIYKKTKLVSSSEADLETDWKSLE 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,773
Number of Sequences: 5004
Number of extensions: 48354
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)