Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L06
         (995 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   5.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   5.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   9.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 514 TSTELKNALR---SIEWDLEDLEDTISIVEKNSSKFKIDNKEICDRRT 648
           T+T+ ++  R   S   DL+DLE+ ++ ++ N+   +I +  I  + T
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQHT 313


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 360 VKCKQRRVAKRSAVRNRRGLISG 292
           ++ +  R++   ++RNR GL+SG
Sbjct: 370 IELQDLRMSPLPSIRNRSGLVSG 392


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 121 VLVTYSYI-LCSNTSSRVKKVTKPKLNSERREATR 222
           +L T S + LC+ +  R   VT+P + S RR + R
Sbjct: 120 LLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKR 154


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 294 GRENSQQTLLRFT-PQ*PHTINLLPPRC 214
           G  NS+     F  PQ P+T+    PRC
Sbjct: 129 GTGNSRANTYNFDYPQVPYTVKNFHPRC 156


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -3

Query: 594 LYNTYCIF*IFQIPFNAAQCIFQFSRSPF 508
           +Y + C   +   PF+   CI +F    F
Sbjct: 146 IYQSSCTIDVTYFPFDQQTCIMKFGSWTF 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,827
Number of Sequences: 438
Number of extensions: 3164
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)