Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L04
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 42 9e-05
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 38 0.002
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 33 0.071
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 30 0.38
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 30 0.50
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.66
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 1.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 1.2
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 28 1.5
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 28 1.5
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 28 2.0
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 2.0
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 2.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 2.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.7
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.7
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 2.7
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 3.5
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 3.5
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 27 3.5
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 4.7
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 4.7
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 27 4.7
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 4.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.2
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 6.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 6.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 6.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.2
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 8.2
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 8.2
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 8.2
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 42.3 bits (95), Expect = 9e-05
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +3
Query: 162 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDL 341
N PKR ++ F F + R + NP + + + K W++L + ++ ++D
Sbjct: 14 NTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDK 73
Query: 342 EDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEK 446
E Y + + Y+T L +K A AKE+
Sbjct: 74 ERYERERKEYDTKLANGEKTGKASAPAAAAAAKEE 108
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/79 (20%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +3
Query: 456 KAEYKELGRPKKPMSSYFIYMQSRKDNI------QGKTLKEYQETVKKDWINLPDSEKAK 617
K + ++ +PK+P S+Y ++ ++++ I + +KE + + + W +L + ++
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKT 167
Query: 618 LEKQAQALMDKYKKDLQAW 674
E++A L + Y++++ A+
Sbjct: 168 YEEEASKLREAYEEEMAAY 186
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 32.7 bits (71), Expect = 0.071
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 AWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE----MA 431
AW + + +L E + + E ++++ED N+ Y +S + Q +R EE A
Sbjct: 143 AWYAFNSHELSDEENSDSSNEREEEVEDDNRSVESYSSS--DYQARSRRRFSEETTQRRA 200
Query: 432 QAKEKRKLKAEYKEL 476
+ KEKRK + E+ +
Sbjct: 201 EIKEKRKKRKEFASI 215
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 30.3 bits (65), Expect = 0.38
Identities = 28/147 (19%), Positives = 69/147 (46%)
Frame = +3
Query: 228 AKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADI 407
AK + + I + Q++ E + + + ++L + +I+A + EE++
Sbjct: 80 AKKRNVEEQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRK- 138
Query: 408 KRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDW 587
K + E+ + KE+ +L E K ++ + I + +++ + K +KE + ++
Sbjct: 139 KELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETFKDDPEED 198
Query: 588 INLPDSEKAKLEKQAQALMDKYKKDLQ 668
N+ S K++ + A + + KK+L+
Sbjct: 199 SNMAWSIIHKIKTEVVAPISE-KKELK 224
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 29.9 bits (64), Expect = 0.50
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Frame = +3
Query: 288 QLDMETKTQMAKEYQKDLEDY---NKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLK 458
++D+E + K+Y+K D N +A E + + + +KR K+E +A + K
Sbjct: 122 KIDVEETEEKVKQYEKQNRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQK 181
Query: 459 AEYKELGRPKKPMSSYFIYMQSRKDN---IQ-GKTLKEYQETVKKDWINLPDSEKAKLEK 626
+ + R + F S KD IQ +LK+ QE + N+ S L
Sbjct: 182 EKER---REQVEQQIIFDLATSGKDPNKIIQLSDSLKKQQENIASSVSNISRSSSILLSD 238
Query: 627 QAQALMD 647
Q D
Sbjct: 239 VQQVAED 245
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.66
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 3/150 (2%)
Frame = +3
Query: 231 KNPGISSKEAIAWTSKHW---QQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKA 401
K P SK+A A + + Q ++ E + K +K+ + K +
Sbjct: 75 KKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMD 134
Query: 402 DIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKK 581
D+ +EE +++ +K K + K + + I S KD + K KE + KK
Sbjct: 135 DLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIE-SSEKDKKKKKKSKENDDAPKK 193
Query: 582 DWINLPDSEKAKLEKQAQALMDKYKKDLQA 671
D EKA ++ ++++ KD A
Sbjct: 194 DRKTRKKEEKA---RKLASMLESENKDNDA 220
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 556 FSVFPCILSFLDCMYIKYEDIGFLGRPSSLYSAFNFLFSLACAISSLTLFISAF 395
F+V PC L C + Y DI +YS F +L A+ TL IS+F
Sbjct: 417 FNVRPCAEKLLKCFFDAYGDIIVSPFKDMIYSVFECPKTLTQAVQQDTL-ISSF 469
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 315 MAKEYQKDLEDYNKIKAMYE--TSLTEEQKADIKRVKEE 425
M+++YQK LED K K+ YE +L +++ + K ++E
Sbjct: 464 MSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQE 502
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Frame = +3
Query: 291 LDMETKTQMAKEYQ-------KDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKR 449
+D+E + +A+E Q +D + YN + +M SLT E+ ++ + K+E+ A+
Sbjct: 1123 VDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKKDEV-MAELDA 1181
Query: 450 KLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWIN 593
+K KEL + ++ D+IQ + L+E Q + +D++N
Sbjct: 1182 LIKKTPKELW--LHDLDAFEHAWNKVMDDIQREMLEEEQSS--RDFVN 1225
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 7/146 (4%)
Frame = +3
Query: 252 KEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMA 431
+ A WT + ++ D + + DY+ + + K D ++ ++
Sbjct: 76 RRAWDWTIEESEKWDQRLRKKKQTIQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKK 135
Query: 432 QAKEKRKLKAEYKELGR-------PKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWI 590
+ K K + A Y E R P K + ++D + K K + T ++D I
Sbjct: 136 EEKSKSRSVALYDEAERLDWVSNKPDKEHVERLVESIKKQDQRRLKNTKR-RGTDEEDHI 194
Query: 591 NLPDSEKAKLEKQAQALMDKYKKDLQ 668
+ K + Q KY KD++
Sbjct: 195 TFINERNRKFNLKLQRFYSKYTKDIK 220
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 321 KEYQKD--LEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYK 470
K++Q+ L D + +K + EQ D+KRV EE+++ ++K+ L+++ K
Sbjct: 102 KDWQEGELLPDGSNVKTLSRYPKVLEQ-VDMKRVNEELSKLQDKQILESQQK 152
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 2.0
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +3
Query: 384 TEEQKADIKRVKEEM-AQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKE 560
T++Q D+K+ KEEM + K KL+ E + L +K + Y +++ + T
Sbjct: 119 TQKQIEDLKKEKEEMEGSLQGKEKLEREVENL---RKELDKYKDLVETEAEKRAAIT--- 172
Query: 561 YQETVKKDWINLPDSEKAKLEKQAQALMDKYKK--DLQAWEL 680
+E +K W+ K ++ A + K +LQA +L
Sbjct: 173 -KEECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQL 213
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/127 (18%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Frame = +3
Query: 306 KTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRP 485
+ + A+ K++E +K SL+ + +A ++ EE+ + ++ +LKA+ +++ +
Sbjct: 21 RAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQL-EELEEETKQLRLKADNEDIQKT 79
Query: 486 KKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLP---------DSEKAKLEKQAQA 638
+ S + + + K L+E E +++ + + E+ +E++ +
Sbjct: 80 EAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEE 139
Query: 639 LMDKYKK 659
+ DKY K
Sbjct: 140 MTDKYTK 146
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 2.7
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +3
Query: 153 LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQ-MAK-- 323
+GL+K P F F+S +RP L A P A L K Q AK
Sbjct: 772 IGLDKNLN--APKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRA 829
Query: 324 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQ 434
E +K + N + + TEE++A + EE +Q
Sbjct: 830 EREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQ 866
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.7
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 6/148 (4%)
Frame = +3
Query: 168 PKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLED 347
P +PL P + ++P L N IA Q E +
Sbjct: 1728 PYQPLQPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAVAAPSESL----N 1783
Query: 348 YNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSR 527
NK ++ + AD+ R +EE + K+K K AE + G K S +S+
Sbjct: 1784 LNKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKNAESGKKGGAKGWFSKLLRRDESK 1843
Query: 528 ------KDNIQGKTLKEYQETVKKDWIN 593
K + K+ Y + +K+ W+N
Sbjct: 1844 DQPTVYKAKLGEKSHLHYDKELKR-WVN 1870
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = +3
Query: 294 DMETKTQMAKEYQKDLEDYN----KIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKA 461
D + KE QK+LE YN K + +++T+E + +K ++E + +
Sbjct: 996 DKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQSKTNNIDHLS 1055
Query: 462 EYKELGRPK-KPMSSYFIYMQSRKDNIQGKTLKEYQ 566
E R + K + + +++R N+Q T + Q
Sbjct: 1056 TILERNRKEYKSLLDDYNQLRARYKNLQSNTPQSTQ 1091
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 252 KEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMA 431
+E A S W + + T+ + +K Y K A Y ++ +E+ KR K +
Sbjct: 426 REIPASDSIAWHSISKKLGTKSPESCRKQ---YEKTIASYSSNQRQEEDQGKKRKKRKKK 482
Query: 432 QAKEKRK 452
++K KRK
Sbjct: 483 KSKGKRK 489
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/117 (18%), Positives = 41/117 (35%)
Frame = +3
Query: 237 PGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRV 416
PGI + + S H + A ++ E+ + + L E Q + +
Sbjct: 661 PGIENIDVTNLVSGHLAYRESMPILLAAVGFEVLDEEVDLVSEPIPEPLRERQSQLLYEI 720
Query: 417 KEEMAQAKEKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDW 587
+ E Q K+K ++ + GR P S + + K K+Y + W
Sbjct: 721 EAEECQNKQKELIEKSLMQKGRSLSPKKSNAFFDSKKIREELKKVKKKYGSSFNSRW 777
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 222 LLAKNPGISSKEAIAWTSKHWQQL--DMETKTQMAKEYQKDLEDYNK 356
LL KN IS K + S ++QL ++ K +K YQK LED N+
Sbjct: 803 LLPKN--ISMKSYHSLFSSQFRQLFEELSNKETQSKLYQKRLEDLNE 847
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 312 QMAKEYQKDLEDYNKIKAMY 371
++A ++ +DL DYN IK +Y
Sbjct: 26 EVAVDFDRDLSDYNTIKGVY 45
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 315 MAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKP 494
+ K+ ++ ++ A E +++K ++ + E A E RK + E ELGR +
Sbjct: 21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDA-EYRKAEREQIELGRKARA 79
Query: 495 MSSYFI 512
+Y++
Sbjct: 80 EGNYYV 85
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 4.7
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +3
Query: 189 FFKFMSQMR--PALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLE--DYNK 356
F +MS+ R +L+ K +A + K W+ ++ K A Y+K + +N+
Sbjct: 287 FTNWMSKRRRNESLIQKANVFFQHSVLAHSFKTWKA-NLSIKNA-ATLYEKKVVFMSFNR 344
Query: 357 IKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 464
A YE+ + + QKA++ K + A K KL+ E
Sbjct: 345 WHANYESHVLDLQKAELFSQKAYYSIALHKWKLRIE 380
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 4.7
Identities = 31/120 (25%), Positives = 49/120 (40%)
Frame = +3
Query: 312 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKK 491
+ A+ + ++E K + E + K VKE+ +EKRK K E+ L K
Sbjct: 491 EQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEF--LKAQKN 548
Query: 492 PMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLPDSEKAKLEKQAQALMDKYKKDLQA 671
S+ + K I K QET D I+ ++LE+ + L K+ QA
Sbjct: 549 EASN------NLKQEIVSKA--GAQETENDDLIDEESDALSELEEDYRQLKKSKKRKNQA 600
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +3
Query: 243 ISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKE 422
I +E ++ + D+E + + + + + + + + A E S E D + +E
Sbjct: 604 IEGQEEVSQDDEEGDFEDLEDE-ENSSDNEMEESSGSSVTAENEESADE---VDFQTERE 659
Query: 423 EMAQAKEKRKLKAEYKELGRPKK 491
E A+ KE+ +L+ E ++ G P+K
Sbjct: 660 ENARKKEELRLRFEEEDRGDPEK 682
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 609 KAKLEKQAQALMDKYKKDLQAWELKMVSIGR 701
+++L+ + AL+++YKK L+ L +IG+
Sbjct: 847 QSELKNELYALLEQYKKQLRCSSLNFKNIGK 877
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 321 KEYQKDLEDYNKIKAMYETSLTEEQK-ADIKRVKEEMAQAKEK-RKLKAEYKELGRPKKP 494
+E DLED+ ETS +EE++ ++ + ++E K K RK K + + R K+
Sbjct: 220 EEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKRA 279
Query: 495 MSSYFIYMQSRKD 533
+ Y Q R++
Sbjct: 280 PHIHIEYEQEREN 292
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 92 LFRIEQSCNSLKNNYSNLKE 33
L I QSCN+L N Y N +E
Sbjct: 935 LLSITQSCNTLSNFYRNAQE 954
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 417 KEEMAQAKEKRKLKAEYKELGRPK--KPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWI 590
+E + A E+RK + E +E P+ P + ++ + D+ + K YQ +
Sbjct: 43 QESIKAAIEQRKSEIEEEEDIDPRYQDPDNEVALFATAPYDHEDEEADKIYQSVEE---- 98
Query: 591 NLPDSEKAKLEKQAQALMDKYKKD 662
+L K++ EKQ Q +KY+K+
Sbjct: 99 HLSKRRKSQREKQEQLQKEKYEKE 122
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +3
Query: 372 ETSLTEEQKADIKRVKEEMAQAKEKRKLKAE-------YKELGRPKKPM 497
ETSLTEEQK ++ +++ A + + E ++L +P +P+
Sbjct: 807 ETSLTEEQKIQLEEARKQRKAADDAARAAIEKYTSIPSLRDLHKPTRPL 855
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 348 YNKIKAMYETSLTEEQKADIK-RVKE--EMAQAKEKRKLKAEYKELGRPKKP 494
Y K K+ + + Q K R KE E+A +++R+L A KEL +P
Sbjct: 190 YGKKKSTEPLTKRQRQNQQKKLRAKEMQELADEEQRRRLAAHRKELHEANRP 241
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.2
Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +3
Query: 264 AWTSKHWQQLDMETKTQMAK-EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAK 440
+++S+H Q ++T T ++ E ++++ D K T+LT++ + +R ++
Sbjct: 597 SFSSEHKPQPSLKTTTDVSSPETKQNIADIRK------TTLTDQTEEFTER-RDNNGSIP 649
Query: 441 EKRKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVKKDWINLPDSEKAKL 620
K+ ++ + LG+ P + RK++I K E Q ++ + +E L
Sbjct: 650 SKQP--SDEQHLGKESLPSQQSTVSNHHRKESIPSKQPTEGQHARQESLPSQQTTETKHL 707
Query: 621 EKQA 632
K++
Sbjct: 708 RKES 711
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 174 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 353
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 354 -KIKAMYETSLTEEQKADIKR 413
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 174 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 353
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 354 -KIKAMYETSLTEEQKADIKR 413
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 402 DIKRVKEEMAQAKEK-RKLKAEYKELGRPKKPMSSYFIYMQSRKDNIQGKTLKEYQETVK 578
++KR +E A K K +K K E+K+ + K I + +K + +GK+ K +E+++
Sbjct: 57 ELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKS-KTKEESIE 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,636
Number of Sequences: 5004
Number of extensions: 67650
Number of successful extensions: 255
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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