Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L03
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 215 9e-57
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 214 2e-56
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 29 0.67
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 2.1
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 3.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.3
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 8.3
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 215 bits (524), Expect = 9e-57
Identities = 112/198 (56%), Positives = 137/198 (69%)
Frame = +2
Query: 101 SAQGHRWATLRPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 280
SA G + A R +R LGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWG
Sbjct: 12 SATGAKRAQYR---KKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWG 68
Query: 281 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAK 460
SE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K
Sbjct: 69 SEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKK 127
Query: 461 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 640
T +S+ RK+ AR +KV+ ALE QF GRL A V+SRPGQ GR DGY
Sbjct: 128 ATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGY 182
Query: 641 ILEGKELEFYLRKIKSKR 694
ILEG+EL FYLR++ K+
Sbjct: 183 ILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 214 bits (522), Expect = 2e-56
Identities = 112/198 (56%), Positives = 137/198 (69%)
Frame = +2
Query: 101 SAQGHRWATLRPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 280
SA G + A R +R LGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWG
Sbjct: 12 SATGAKRAQYR---KKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWG 68
Query: 281 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAK 460
SE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K
Sbjct: 69 SEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKK 127
Query: 461 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 640
T +S+ RK+ AR +KV+ ALE QF GRL A V+SRPGQ GR DGY
Sbjct: 128 ATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGY 182
Query: 641 ILEGKELEFYLRKIKSKR 694
ILEG+EL FYLR++ K+
Sbjct: 183 ILEGEELHFYLRRMAPKK 200
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 29.5 bits (63), Expect = 0.67
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 671 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 558
D + CLLR H+RD + + RK N G LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 2.1
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +2
Query: 170 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
P NT + PQ RSR T R+L +G S S ++ +TR V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581
Query: 350 RTKTLVKNAIVVVDATPFRQWYE 418
+ ++ V TPF +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +2
Query: 392 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 571
+TP + H KKG+K+ A++ ++R + AR+ A + K ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813
Query: 572 FHTGRLLACVASR 610
+LA + +
Sbjct: 814 TDPQTILAILKQK 826
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 275 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 448
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 449 K 451
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 414 YHCLNGVASTTTIAFLTRVFVRTNS 340
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,480
Number of Sequences: 5004
Number of extensions: 46686
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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