Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L03
(893 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 313 5e-85
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 313 5e-85
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 313 5e-85
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 313 5e-85
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 253 7e-67
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 120 7e-27
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 7.5
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 7.5
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 7.5
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 7.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 313 bits (769), Expect = 5e-85
Identities = 142/190 (74%), Positives = 164/190 (86%)
Frame = +2
Query: 131 RPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 310
+P +R LGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRI
Sbjct: 19 KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRI 78
Query: 311 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 490
IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+N
Sbjct: 79 IDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILN 138
Query: 491 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 670
KKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 671 LRKIKSKRAK 700
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 313 bits (769), Expect = 5e-85
Identities = 142/190 (74%), Positives = 164/190 (86%)
Frame = +2
Query: 131 RPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 310
+P +R LGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRI
Sbjct: 19 KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRI 78
Query: 311 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 490
IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+N
Sbjct: 79 IDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILN 138
Query: 491 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 670
KKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 671 LRKIKSKRAK 700
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 313 bits (769), Expect = 5e-85
Identities = 142/190 (74%), Positives = 164/190 (86%)
Frame = +2
Query: 131 RPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 310
+P +R LGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRI
Sbjct: 19 KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRI 78
Query: 311 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 490
IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+N
Sbjct: 79 IDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILN 138
Query: 491 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 670
KKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 671 LRKIKSKRAK 700
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 313 bits (769), Expect = 5e-85
Identities = 142/190 (74%), Positives = 164/190 (86%)
Frame = +2
Query: 131 RPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 310
+P +R LGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRI
Sbjct: 19 KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRI 78
Query: 311 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 490
IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+N
Sbjct: 79 IDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILN 138
Query: 491 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 670
KKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKELEFY
Sbjct: 139 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 198
Query: 671 LRKIKSKRAK 700
LRKIK+++ K
Sbjct: 199 LRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 253 bits (619), Expect = 7e-67
Identities = 125/190 (65%), Positives = 147/190 (77%)
Frame = +2
Query: 131 RPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 310
+P +R LGRPAANT++GP+RIH+VR RGG C TRKTRI
Sbjct: 19 KPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRKTRI 58
Query: 311 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 490
IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+N
Sbjct: 59 IDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILN 118
Query: 491 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 670
KKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY+LEGKELEFY
Sbjct: 119 KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFY 178
Query: 671 LRKIKSKRAK 700
LRKIK+++ K
Sbjct: 179 LRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 120 bits (289), Expect = 7e-27
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +2
Query: 461 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 640
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 641 ILEGKELEFYLRKIKSKRAK 700
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 7.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 440 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 586
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,233,561
Number of Sequences: 237096
Number of extensions: 1879639
Number of successful extensions: 4290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4290
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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