Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_L03
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 272 2e-73
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.84
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.84
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.84
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.84
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.84
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.84
Z81503-2|CAB04112.1| 517|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z48717-8|CAA88609.1| 518|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 31 1.5
Z81503-3|CAB04113.1| 518|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z48717-4|CAA88607.1| 515|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 272 bits (668), Expect = 2e-73
Identities = 126/185 (68%), Positives = 153/185 (82%)
Frame = +2
Query: 146 QRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 325
+R LGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +Y
Sbjct: 24 KRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMY 83
Query: 326 NASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 505
NA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS
Sbjct: 84 NATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSH 143
Query: 506 KTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIK 685
T +KY RQ+ A V+ L EQF+TGRLLA ++S PGQ G+A+GYILEGKEL+FYLRKI+
Sbjct: 144 HTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIR 203
Query: 686 SKRAK 700
+K+AK
Sbjct: 204 AKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 245 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 245 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 245 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 245 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 245 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 245 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 349
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z81503-2|CAB04112.1| 517|Caenorhabditis elegans Hypothetical
protein F14F7.2 protein.
Length = 517
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 83 RRVSLASAQGHRWATLRPXAS 145
+RV+L SAQGHRW LR A+
Sbjct: 112 KRVTLFSAQGHRWKRLRTIAN 132
>Z48717-8|CAA88609.1| 518|Caenorhabditis elegans Hypothetical
protein T10B9.10 protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 83 RRVSLASAQGHRWATLRPXAS 145
+RV L +AQGHRW LR AS
Sbjct: 113 KRVPLVAAQGHRWKRLRTLAS 133
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 302 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 472
T+I+ + Y A E + K L+ K +I+ + + +S+ RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 473 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 589
++AI ++ + +K L + + +K E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 302 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 472
T+I+ + Y A E + K L+ K +I+ + + +S+ RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 473 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 589
++AI ++ + +K L + + +K E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>Z81503-3|CAB04113.1| 518|Caenorhabditis elegans Hypothetical
protein F14F7.3 protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 83 RRVSLASAQGHRWATLRPXAS 145
+RV+L S+QGHRW LR +S
Sbjct: 113 KRVNLFSSQGHRWKRLRTISS 133
>Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.2 protein.
Length = 520
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 83 RRVSLASAQGHRWATLRPXAS 145
+R L SAQGHRW LR +S
Sbjct: 113 KRAHLVSAQGHRWKRLRTLSS 133
>Z48717-4|CAA88607.1| 515|Caenorhabditis elegans Hypothetical
protein T10B9.7 protein.
Length = 515
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 83 RRVSLASAQGHRWATLRPXASQ 148
+RV L +AQG+RW LR +SQ
Sbjct: 115 QRVHLLAAQGYRWKRLRTISSQ 136
>Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.5 protein.
Length = 520
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 86 RVSLASAQGHRWATLRPXAS 145
R+ L ++QGHRW LR AS
Sbjct: 114 RIHLVTSQGHRWKRLRTLAS 133
>Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.1 protein.
Length = 520
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 83 RRVSLASAQGHRWATLRPXAS 145
+R L AQGHRW LR AS
Sbjct: 113 KRAHLVLAQGHRWKRLRTLAS 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,321
Number of Sequences: 27780
Number of extensions: 274440
Number of successful extensions: 866
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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