Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L03
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   335   3e-94
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   2.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   2.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  335 bits (824), Expect = 3e-94
 Identities = 154/190 (81%), Positives = 171/190 (90%)
 Frame = +2

Query: 131 RPXASQRXXXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 310
           +P   +R   LGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGNFSWGSEC+TRKTRI
Sbjct: 19  KPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRI 78

Query: 311 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 490
           IDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LPLGRK+GAKLTEAEE ++N
Sbjct: 79  IDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLN 138

Query: 491 KKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFY 670
           KKRS+K   KY ARQR AKVE ALEEQF TGR+LAC++SRPGQCGR DGYILEGKELEFY
Sbjct: 139 KKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFY 198

Query: 671 LRKIKSKRAK 700
           +R+IKSK+AK
Sbjct: 199 MRRIKSKKAK 208



 Score = 29.5 bits (63), Expect = 0.043
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 93  HWHQRRATGGXR 128
           HWH+RRATGG R
Sbjct: 7   HWHKRRATGGKR 18


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 385 YNNCILDKGLCT 350
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 385 YNNCILDKGLCT 350
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 385 YNNCILDKGLCTHQ 344
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 385 YNNCILDKGLCTHQ 344
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 418 LIPLPEWSCIYYNNC 374
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 418 LIPLPEWSCIYYNNC 374
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 418 LIPLPEWSCIYYNNC 374
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,172
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)