Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L02
         (921 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09084 Cluster: Extensin (Class II) precursor; n=3; Sol...    34   4.4  

>UniRef50_Q09084 Cluster: Extensin (Class II) precursor; n=3;
           Solanum lycopersicum|Rep: Extensin (Class II) precursor
           - Solanum lycopersicum (Tomato) (Lycopersicon
           esculentum)
          Length = 322

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 17/64 (26%), Positives = 22/64 (34%)
 Frame = +3

Query: 567 PKASXXXGTVXXASXPXYXHXAPPPSRXXWQXPLXHXXPXPXPL*XSPXSXLYDPPAHXX 746
           PK++           P Y H +PPP          H  P P P+   P      PP +  
Sbjct: 52  PKSTPLPPPAPYKKSPTYQHRSPPPPTHKISPVTHHSPPPPSPVYDHPSPSSPPPPVYYS 111

Query: 747 PTCP 758
           P  P
Sbjct: 112 PPPP 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,046,190
Number of Sequences: 1657284
Number of extensions: 4921270
Number of successful extensions: 6045
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5961
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)