Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_L02
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1682 - 39130696-39131705,39132355-39132583                       31   1.7  
11_06_0610 - 25449085-25453284                                         29   3.9  
01_05_0401 - 21801454-21801888                                         28   9.1  

>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 612 PXYXHXAPPPSRXXWQXPLXHXXPXPXPL*XSPXS-XLYDPPAHXXPTCP 758
           P + + +PPPS   +  P  +    P P   SP     + PP+H  P+ P
Sbjct: 182 PIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPP 231


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
 Frame = +3

Query: 546  TPEKXXEPKASXXXG--TVXXASXPXYXHXAPPPSRXXWQXPLXHXXPXPXPL*XSPXSX 719
            TPEK   P         +V  AS P      PPP+      P     P P P+   P   
Sbjct: 1090 TPEKSYPPSTPEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPVPVSSPPPPE 1149

Query: 720  LYDPP 734
               PP
Sbjct: 1150 KSPPP 1154


>01_05_0401 - 21801454-21801888
          Length = 144

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
 Frame = -3

Query: 811 ADGNAPRLXXRKATXIRXGQ-VGXXX-AGGSYRXDXGDXYXGXGXGXXCXSGXCHXXREG 638
           ADG  PR   R A   R    VG    AGG    + G      G G  C SG      +G
Sbjct: 48  ADGGGPR--GRSAGWRRTAMLVGDAAEAGGGAEANGGARRDLDGGGRWCSSGPRRPAEDG 105

Query: 637 GGAXXXYXGXEA 602
           GGA     G  A
Sbjct: 106 GGARRGRLGTVA 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,749,692
Number of Sequences: 37544
Number of extensions: 169814
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)