Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K24
         (1280 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60832-1|AAA62822.1|  635|Homo sapiens alpha-2 type VIII collage...    32   5.2  
AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha...    31   9.0  
AL445543-2|CAI14773.1|  714|Homo sapiens collagen type XXVII alp...    31   9.0  
AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alp...    31   9.0  
AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alp...    31   9.0  

>M60832-1|AAA62822.1|  635|Homo sapiens alpha-2 type VIII collagen
           protein.
          Length = 635

 Score = 31.9 bits (69), Expect = 5.2
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +2

Query: 569 GPPGVXXDXGX-GPPXLPGAPXAXRXLXTXSFXPXHXP 679
           GPPGV    G  GPP LPG P A            H P
Sbjct: 442 GPPGVPGSPGITGPPGLPGPPGAPGAFDETGIAGLHLP 479


>AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha 1
           chain precursor protein.
          Length = 1860

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 551 PXXXXIGPPGVXXDXGX-GPPXLPGAP 628
           P    +GPPG   D G  GPP LPG P
Sbjct: 619 PFPLLMGPPGPKGDCGLPGPPGLPGLP 645


>AL445543-2|CAI14773.1|  714|Homo sapiens collagen type XXVII alpha
           1 protein.
          Length = 714

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 551 PXXXXIGPPGVXXDXGX-GPPXLPGAP 628
           P    +GPPG   D G  GPP LPG P
Sbjct: 566 PFPLLMGPPGPKGDCGLPGPPGLPGLP 592


>AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alpha
           1 protein.
          Length = 1860

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 551 PXXXXIGPPGVXXDXGX-GPPXLPGAP 628
           P    +GPPG   D G  GPP LPG P
Sbjct: 619 PFPLLMGPPGPKGDCGLPGPPGLPGLP 645


>AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alpha
           1 protein.
          Length = 1860

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 551 PXXXXIGPPGVXXDXGX-GPPXLPGAP 628
           P    +GPPG   D G  GPP LPG P
Sbjct: 619 PFPLLMGPPGPKGDCGLPGPPGLPGLP 645


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,685,373
Number of Sequences: 237096
Number of extensions: 1306028
Number of successful extensions: 7198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7169
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18385440820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)