Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K23
         (1496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.077
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.72 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.077
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -3

Query: 552 PXPPPPXXXXXXXFFXXPPPPXGGGGXXKKXXPPPPPXXXEGEGR 418
           P PPP            PPPP G  G      PPPPP    G  R
Sbjct: 750 PVPPPAPIMGGPP---PPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -3

Query: 552 PXPPPPXXXXXXXFFXXPPPPXGGGGXXKKXXPPPPP 442
           P P P            PPPP    G      PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -3

Query: 552 PXPPPPXXXXXXXFFXXPPPPXGGGGXXKKXXPPPPPXXXEGEG 421
           P PPPP             PP G G       PPPPP      G
Sbjct: 311 PPPPPPPSRRNRG-----KPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 467 KKXPPPPPPXXXKERGE 417
           KK PPPPPP   + RG+
Sbjct: 308 KKRPPPPPPPSRRNRGK 324



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = -3

Query: 567 GGXXXPXPPPPXXXXXXXFFXXPPPPXGGGGXXKKXXPPPPPXXXEGEGR 418
           G      PPPP           P PP G     +   PPPPP      GR
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQG-----RSAPPPPPPRSAPSTGR 374



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 469 KKXXPPPPPPXXXRRGE 419
           KK  PPPPPP    RG+
Sbjct: 308 KKRPPPPPPPSRRNRGK 324


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 500 PPXXGGGGXXXKKXPPPPPPXXXKER 423
           PP    G     + PPPPPP   K+R
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 501 PPPPXGGGGXXKKXXPPPPP 442
           PPPP  G     +  PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 501 PPPPXGGGGXXKKXXPPPPP 442
           PPPP    G      PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 501 PPPPXGGGGXXKKXXPPPPP 442
           PPPP   G       PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,660
Number of Sequences: 5004
Number of extensions: 21061
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 836477428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)