Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K17
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 442 CLLCNLY*DQKSLRSSRIQMQGR 510
           CLLC    DQK+L  S ++  G+
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGK 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 821  ARFIANSPXT-LPGFPSSTGXRFTSTVTRSVKLPSLN---PKDQFSW 693
            ++ +A +P   +P   +S   +FT+T    VKLP L    P  + +W
Sbjct: 1264 SKIVALAPSVRVPAKIASFDDKFTATYKEDVKLPCLAVGVPAPEVTW 1310


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 90  VYKKKVSKC*A*WVLNLNI 146
           VY+ +V KC   W+L+  I
Sbjct: 123 VYRMQVDKCGRLWILDTGI 141


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 602 KINLPKMYRAXTYLKRPEVLFINGATD 682
           +IN  K+ R     KRP   F   ATD
Sbjct: 146 RINFTKLKRHHPRYKRPRTTFEPRATD 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,871
Number of Sequences: 438
Number of extensions: 4862
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)