Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K16
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 574 PPPPPGXGGXXXGXPPPPPPXXXPPPXGXGGXXXS 678
           P P P           PP P   PPP G  G   S
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 562 PXKXPPPPPGXGGXXXGXPPPPPPXXXP 645
           P +  PP P   G   G PP  PP   P
Sbjct: 34  PQRGSPPNPSQ-GPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 616  PPPPPPXXXPPPXG 657
            PPPPPP   PP  G
Sbjct: 1355 PPPPPP---PPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 616 PPPPPPXXXPP 648
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -1

Query: 709 GGEXPPXGGGGXPXXPPXPXXAGXXXGGGGGG 614
           GG      GG            G   GGGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.151    0.531 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,386
Number of Sequences: 438
Number of extensions: 10136
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)