Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K15
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    28   1.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   3.3  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   7.6  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   7.6  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 488 PHWAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 387
           P W   ++ L +   PS+D   P S  PP+ S S
Sbjct: 36  PQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNS 69


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 585 KKLNKKYFHQHVQYDRRISFTNTCSKFRMVSISSLGGE 472
           KK N+ Y  + +QY   I   N C KF  ++   L  E
Sbjct: 718 KKANELYIFEDMQYMSDIELHNLCCKFPSINSFQLKDE 755


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 435 RHRTARQQQAASNEYIEYDFA 373
           R RT  +Q   + +YIEYDF+
Sbjct: 43  RKRTFDEQSEITKDYIEYDFS 63


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 446 NRPRPTPASSPPNEDMDTMRNFEQVFVKL 532
           N P+P   SSPP E +   RN E+  + +
Sbjct: 605 NSPQPVNGSSPPYELVFVTRNTEEATITI 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,144
Number of Sequences: 5004
Number of extensions: 50892
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)