Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_K14
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 183 3e-47
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 100 5e-22
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 59 9e-10
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 35 0.018
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 32 0.12
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.88
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 6.2
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.2
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 8.2
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.2
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 183 bits (445), Expect = 3e-47
Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 2/199 (1%)
Frame = +2
Query: 119 VTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFS 298
V KYK+AG++ V+++V+ C P A +IC GD+L+ E KV++ KD+ KGIAF
Sbjct: 22 VNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRT-KDAYKGIAFP 80
Query: 299 TCVSVNNCICHFSPIASEPD--YILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 472
T VS N+ H SP+ S+P+ LK GD+ KI LGAHIDGF ++VA T VV E V+G
Sbjct: 81 TAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGP 140
Query: 473 AADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQXRIDGE 652
AADV KPG N+ VT+ + KI+ YGCKP+ GMLSHQ ++ IDG+
Sbjct: 141 AADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVIDGK 200
Query: 653 KSIIQNPSEAQRKEHEKXT 709
K +I NPS++QR E + T
Sbjct: 201 KQVILNPSDSQRSEMDTFT 219
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 99.5 bits (237), Expect = 5e-22
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Frame = +2
Query: 74 LTQKXSKKRIAEXLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 253
L S R+ + +KY+ AG +V++ QV ++CVP AS REI +GD L+ E +
Sbjct: 3 LDPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSS 62
Query: 254 VFKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGDLAKIDLGAHIDG 415
++K ++ +KGIA T + VNNC +++P ++ Y L+ GD+ KI +G H DG
Sbjct: 63 IYKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDG 121
Query: 416 FIAVVAHTVVV 448
+ A+++HT+VV
Sbjct: 122 YTALISHTIVV 132
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 58.8 bits (136), Expect = 9e-10
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Frame = +2
Query: 236 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 415
+E T + +E K GI F T VS+N+C H++P A + ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206
Query: 416 FIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAE--- 586
I A T+ + + A V + A+ E ++ E
Sbjct: 207 RIVDSAFTMSF-DPQYDNLLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEING 265
Query: 587 --YGCKPIEGMLSHQLKQXRIDGEKS--IIQNPSEAQRKEHE 700
+ K I + H L I G KS I++ E + +E E
Sbjct: 266 KTHQVKSIRNLCGHNLDPYIIHGGKSVPIVKGGEEIKMEEGE 307
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 34.7 bits (76), Expect = 0.018
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 296 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 454
S C SVN ICH P P L+ GD+ ID+ + +GF + T VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229
>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -1
Query: 601 WLTTIFSTYFLNGFSDCIVLSTR---LQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMS 431
W++++ L G S I LST L + K+ + M + C S +T + N C +
Sbjct: 5 WVSSLLG---LLGLSTAIPLSTEADALLDRKTIYFGMKAYDDVNCKGSTSYTISFNKCQA 61
Query: 430 YNSYKSINVST 398
Y + SIN T
Sbjct: 62 YPNINSINALT 72
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -3
Query: 380 NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 291
+L+ S+C V+ QW+ ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 183 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 278
AF T +Q Y N NLY+ ++ S R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 442 YCMSYNSYKSINVSTKIYLG*ISF 371
YC +YKS+ + T +Y+G F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -3
Query: 608 PQLAYNHIQHLFSE---WLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFHPQLL 438
P LAY + + FS + +SS + +P ++ L ++ LQ +LH+H +L
Sbjct: 375 PSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLHYHDLIL 434
Query: 437 Y 435
Y
Sbjct: 435 Y 435
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 232 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 128
K + KF+ C +++A C+D L S H C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,383
Number of Sequences: 5004
Number of extensions: 58927
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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