Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_K13
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 223 2e-59
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 144 2e-35
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 142 8e-35
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 118 2e-27
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 107 3e-24
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 103 4e-23
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 102 6e-23
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.69
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.6
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 4.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 6.5
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 8.5
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 223 bits (546), Expect = 2e-59
Identities = 116/181 (64%), Positives = 140/181 (77%), Gaps = 1/181 (0%)
Frame = +3
Query: 66 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 245
+++Y+FSLTTFSP+GKLVQIEYAL AV AG TSVGIKA++GVV+ATE K S L S+
Sbjct: 2 TDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASL 61
Query: 246 NKVEMITGHIGMVYSGMGPYYRLLVTQARKMAQ-QYFLMYHEPIPTAQLVQRVATVMQEY 422
KV IT IGMVYSGMGP +R+LV ++RK+AQ Y +Y+E PT LVQ +A+VMQE
Sbjct: 62 EKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQES 121
Query: 423 TQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEX 602
TQSGGVRPFGVSLL+ G +E P L+Q DPSG YFAWKATA+GK+ KTFLEKRY +
Sbjct: 122 TQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDE 181
Query: 603 L 605
L
Sbjct: 182 L 182
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/34 (58%), Positives = 21/34 (61%)
Frame = +1
Query: 571 KLSLKKDIQXTWXLDDAVHTAILTLKEGFEGPXT 672
K L+K LDDAVHTAIL LKE FEG T
Sbjct: 171 KTFLEKRYNDELELDDAVHTAILALKETFEGELT 204
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 144 bits (348), Expect = 2e-35
Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Frame = +3
Query: 75 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 254
Y +L+ FSP G+L+Q+EY AV G T++ ++ + +VI E K+ L + + K+
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKI 63
Query: 255 EMITGHIGMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSG 434
M+ H+ + ++G+ R+L+ +AR AQ + L +P+ L + VA V Q+YTQSG
Sbjct: 64 AMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSG 123
Query: 435 GVRPFGVSLLICGWEEG--RPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEXL 605
GVRPFGVS LI G++ G P ++Q +P+G Y AWKATA+G+ + +LEK + E L
Sbjct: 124 GVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGL 182
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 142 bits (343), Expect = 8e-35
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 2/182 (1%)
Frame = +3
Query: 66 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHS 242
S Y T FSP G+L Q+EYAL A+ G ++GI A +G+V+A E K S +L E S
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEES 61
Query: 243 VNKVEMITGHIGMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEY 422
K+ I ++ +G+ +L+ AR++ QQY ++E +P QLV+RV + Q Y
Sbjct: 62 AEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGY 121
Query: 423 TQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 599
TQ GG+RPFGVS L GW+ R Y LFQ +PSG Y +W+A ++G N + ++ + + Y +
Sbjct: 122 TQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKD 181
Query: 600 XL 605
+
Sbjct: 182 DI 183
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 118 bits (283), Expect = 2e-27
Identities = 62/184 (33%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Frame = +3
Query: 60 LASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 239
+ Y + TFSP G+L Q+EYA+ A+ G T++G+K + VV+ E + S L + H
Sbjct: 3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESH 62
Query: 240 SVNKVEMITGHIGMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 419
SV K+ I HIG SG+ R ++ AR Q + Y EP Q + +
Sbjct: 63 SVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALR 122
Query: 420 YTQSGG------VRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFL 581
+ + RPFGV+LLI G +E P L+ +PSG YF ++A A+G K+ L
Sbjct: 123 FGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSEL 182
Query: 582 EKRY 593
K +
Sbjct: 183 VKEF 186
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 107 bits (256), Expect = 3e-24
Identities = 55/172 (31%), Positives = 91/172 (52%)
Frame = +3
Query: 72 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 251
+Y TT+SP G+L Q+EYAL A+ G +VG+ + V+ ++ L K
Sbjct: 5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK--K 62
Query: 252 VEMITGHIGMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 431
+ I HIG+ +G+ P R+L ++ A ++ PIP +L+ +VA Q TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 432 GGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEK 587
G RP+GV L+ G++E P+L + PSG + T+MG + +T++E+
Sbjct: 123 YGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIER 174
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 103 bits (247), Expect = 4e-23
Identities = 55/164 (33%), Positives = 83/164 (50%)
Frame = +3
Query: 96 FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHI 275
FSP G+L Q EYA AV T +GIK +GV++A E S L N++ + HI
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHI 73
Query: 276 GMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGV 455
G+ +G P + +V +AR A + Y PIP + R+ +Q +T VRPFGV
Sbjct: 74 GIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGV 133
Query: 456 SLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEK 587
+ ++ P+L+ +P+G Y+ + A GK + LEK
Sbjct: 134 MSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK 177
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 102 bits (245), Expect = 6e-23
Identities = 63/172 (36%), Positives = 92/172 (53%), Gaps = 2/172 (1%)
Frame = +3
Query: 84 SLTTFSPSGKLVQIEYALAAVA-AGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEM 260
++T FSP G+L Q+EYA A AG TSVG+ N + ++ K L D +V V
Sbjct: 10 TITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFP 69
Query: 261 ITGHIGMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGV 440
IT IG V +G R V++AR A ++ P+P L +R+A + Q TQ +
Sbjct: 70 ITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAM 129
Query: 441 RPFGVSL-LICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRY 593
RP GV++ L+ +E P LF+ DP+G Y +KAT+ G +LEKR+
Sbjct: 130 RPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRF 181
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.5 bits (63), Expect = 0.69
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 280 MPMWPVIISTLLTLCSSYSM 221
+P+WP+++S LL + SY M
Sbjct: 1508 LPLWPIVVSELLIIFKSYCM 1527
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 228 YDEHSVNKVEMITG----HIGMVYSGMGPYYRLLVTQARKMAQQYFLMYHEPIPTAQLVQ 395
Y +H+VNK+++IT V + L T RK+ Y+ +Y P +L++
Sbjct: 1589 YSQHTVNKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALYDVPTTDVELLK 1648
Query: 396 R 398
R
Sbjct: 1649 R 1649
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 268 PVIISTLLTLCSSYSMLLCLFSVAITTPFDALMPTEVPPAA 146
P +++T CSS L L + P A +P + PP A
Sbjct: 265 PTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLA 305
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 6.5
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = -1
Query: 274 MWPVIISTLLTLCSSYSMLLCLFSVAITTP 185
+W +++ L + ++S ++C+F V + P
Sbjct: 2245 LWALLLGVLAWISRTHSWIICVFGVGLGAP 2274
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 271 WPVIISTLLTLCSSYSMLLCLFSVAITTP 185
WP+ I + T+ S+ +LC++ ++ P
Sbjct: 33 WPIRIRIINTIIISFMTMLCMYGSSVFMP 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,643
Number of Sequences: 5004
Number of extensions: 62354
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -