Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K13
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 192 VIATENKHKSILYDEHSVNKVEMITG 269
           + A+    ++IL+ + S  KVEMITG
Sbjct: 805 IYASSIDKENILFLDLSTGKVEMITG 830


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 115 NLPEGLNVVREKLYLS 68
           NLP GL V R+K++++
Sbjct: 187 NLPLGLEVWRDKVFIT 202


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  LVIIGVGEIQFFSHNI*PLGQ 112
           LV +GVG ++ F H++  LG+
Sbjct: 307 LVQLGVGFMRIFGHHLNRLGR 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,455
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)