Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K09
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...   152   7e-38
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   2.0  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    27   3.5  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score =  152 bits (368), Expect = 7e-38
 Identities = 73/138 (52%), Positives = 89/138 (64%)
 Frame = +1

Query: 151 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGIC 330
           ++ LTRIAIV+ D+C+PK+CRQEC++SCPVVR GKLCIEV P D+IA ISE LCIGCGIC
Sbjct: 2   SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGIC 61

Query: 331 VKKCPFDAITIINIPSNLEKHTXHRLLQKLIQAPSXXYPKXRRSSXSCXAKTVXEKSTGL 510
           VKKCPF AI IIN+P+NLE    HR      +      P+  +         +  KST L
Sbjct: 62  VKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIG-KSTAL 120

Query: 511 KILAXXXKXXXGSLX*PP 564
           KIL+   K   G    PP
Sbjct: 121 KILSGKMKPNLGRYDNPP 138


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 298 SEELCIGCGICVKKCPFDAITI 363
           +EEL +G G C+   PFD +T+
Sbjct: 239 NEELLMGYGFCLPDNPFDTVTL 260


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 255 FSHTYNRTTLLTFLPTSLWLAAISIHNSDTS*LVGF 148
           F   Y R ++  +LP ++W+  IS+H    S L+ F
Sbjct: 129 FLLAYLRISIDRYLPIAIWIGLISLHPKLRSYLIQF 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,267
Number of Sequences: 5004
Number of extensions: 42009
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)