Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K03
         (876 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC049202-1|AAH49202.2|  508|Homo sapiens POLM protein protein.         31   4.1  

>BC049202-1|AAH49202.2|  508|Homo sapiens POLM protein protein.
          Length = 508

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -1

Query: 312 SSFTT*SRVQNKVPHYGYARLSGREXXXXXXXXXXXSPEAERRRWTPSRPSHPGPTRPQP 133
           S  TT S++Q  +PH+G    S R              E ER R +   P+ PGP  P P
Sbjct: 191 SPVTTLSQLQG-LPHFG--EHSSR--VVQELLEHGVCEEVERVRRSERAPAPPGPEHPSP 245

Query: 132 HV-------GAGQRCNAGXPW 91
            V       G G  C AG  W
Sbjct: 246 AVRCRCPAAGGGGSCGAGPAW 266


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,315,338
Number of Sequences: 237096
Number of extensions: 1859115
Number of successful extensions: 10097
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10096
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)