Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_K01
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.94
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.6
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 1.6
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 28 2.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 2.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 27 3.8
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 27 5.0
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 27 5.0
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 26 6.6
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 29.1 bits (62), Expect = 0.94
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = -1
Query: 305 LFHCFFLYSLICFLSSMFKSFQCGMILLH 219
L +C+++YS + +SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSVSSKFRSFTFGCVVVY 80
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 305 LFHCFFLYSLICFLSSMFKSFQCGMILLH 219
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 305 LFHCFFLYSLICFLSSMFKSFQCGMILLH 219
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 305 LFHCFFLYSLICFLSSMFKSFQCGMILLH 219
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 196 RDLAWEDICKRII-PHWNDLNMEDRKQIREYKKKQWNNVRDGYR 324
RD AW+ +C I P +++ Q + K W NVR YR
Sbjct: 478 RDDAWDFVCHCITDPKDRFCSLKQVMQHPYFSKIDWKNVRTAYR 521
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +1
Query: 169 CSNYQNKTQRDLAWEDICKRIIP---HWNDLNMEDRKQIREYKKKQWNNVRDGYRKYLNR 339
C NY + LA E + K ++ W + + E ++++REYKK W + + K + +
Sbjct: 1095 CFNYDRQECEYLA-EIVFKTLVEKEREWRENSEEWKEKMREYKK--WQSTANQRAKQMEK 1151
Query: 340 NKNTPVPKKK 369
+ + K+K
Sbjct: 1152 FEKSATEKQK 1161
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 160 NVGCSNYQNKTQRDLAWE---DICKRIIPHWNDLNMEDRKQIREYKKKQWNNVRD 315
N+G +++ +T DL E ++ PH + RK+ R KKK ++V D
Sbjct: 69 NIGANSFSAETPVDLKKENETELANISGPHKKSTSTSTRKRARSSKKKATDSVSD 123
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = +1
Query: 190 TQRDLAWEDICKRII---PH---WNDLNMEDRKQIREYKKKQWNNVRDGYRKYLNRN-KN 348
T+ +L +++ R++ PH W+++ + R Q+ E+ KK+W ++ ++ R +
Sbjct: 163 TEPELQDQELLPRLLKANPHQQGWSNMMLYLRYQVEEFAKKKWGSMEALDAEFERREVQK 222
Query: 349 TPVPKKKF 372
+ +KKF
Sbjct: 223 KEMKEKKF 230
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 220 CKRIIPHWNDLNMED 264
CK PHWNDL+ D
Sbjct: 403 CKPFEPHWNDLSPHD 417
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 427 EIYCFSRWVVRTVDHPRI*IFFWAPEC-FYFYLGTFCNHLLHCST 296
+++ +V T PR +F+A + ++FYL C H H +T
Sbjct: 199 QVFEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTT 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,708
Number of Sequences: 5004
Number of extensions: 48990
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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