Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_K01
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.24 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 283 YKKKQWNNVRDGYRKYLNRNKNTPVPKKKFIYGDDLQFLLPI 408
           YK   +NN  + Y  Y N N N     KK  Y  +    +P+
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPV 363


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 283 YKKKQWNNVRDGYRKYLNRNKNTPVPK 363
           YK   +NN  + Y    N N N    K
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +1

Query: 283 YKKKQWNNVRDGYRKYLNRNKNTPVPK 363
           YK   +NN  + Y    N N N    K
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,879
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)