Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J23
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 36 0.045
11_06_0610 - 25449085-25453284 31 0.96
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 0.96
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 0.96
01_01_0083 + 631196-631675 30 2.2
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.9
04_03_0904 + 20717005-20718087 29 5.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.1
02_02_0338 + 9105725-9106581,9106950-9107091 29 5.1
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.1
12_02_1174 - 26696869-26698191 29 6.8
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 6.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.0
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 35.9 bits (79), Expect = 0.045
Identities = 23/92 (25%), Positives = 25/92 (27%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
PPPP FG P P PP PP G N P
Sbjct: 62 PPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121
Query: 652 XXXPXTPXPGPXXKTXXXGPPPPXKXKKXTPP 747
P P P + PPP + K P
Sbjct: 122 PPPPPPPTQPPPREAQLAPPPPREQQSKSALP 153
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 0.96
Identities = 22/92 (23%), Positives = 25/92 (27%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
PPPP G P S PP + PP G +P
Sbjct: 511 PPPPSS-----GWLPKSPERKKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSP 565
Query: 652 XXXPXTPXPGPXXKTXXXGPPPPXKXKKXTPP 747
P P P G PP K +PP
Sbjct: 566 PPVPEGHTPSPPKSGPPAGESPPTPESKASPP 597
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.5 bits (68), Expect = 0.96
Identities = 25/100 (25%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
Frame = +1
Query: 427 PXPGXXXKFXXGKXXPPPP-GXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXX 603
P PG KF PPPP G S P PP PG +
Sbjct: 654 PAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPP 713
Query: 604 XKXGXTPSXXXXXXXXXXXP-XTPXPGPXXKTXXXGPPPP 720
P+ P P P K PPPP
Sbjct: 714 PPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPP 753
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/92 (25%), Positives = 24/92 (26%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
PPPP F PP P PP + PP PS
Sbjct: 551 PPPPSGNKPAFSPPPPPP-PPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPP 609
Query: 652 XXXPXTPXPGPXXKTXXXGPPPPXKXKKXTPP 747
P P P PPPP PP
Sbjct: 610 PILPNRSVPPPPP------PPPPLPNHSVLPP 635
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 31.5 bits (68), Expect = 0.96
Identities = 23/80 (28%), Positives = 23/80 (28%), Gaps = 1/80 (1%)
Frame = +1
Query: 484 GXKXXXFGXPPX-SXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXXXXX 660
G K G P P PP G P G K G P
Sbjct: 149 GDKCFHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPK 208
Query: 661 PXTPXPGPXXKTXXXGPPPP 720
P P PGP K GPP P
Sbjct: 209 PKPPKPGPKPK---PGPPQP 225
>01_01_0083 + 631196-631675
Length = 159
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/71 (23%), Positives = 21/71 (29%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
PPPP + PP S PP + + PP G P+
Sbjct: 45 PPPPSTPSSGYSYPPPSSSSSNTPP-SSSSYWNYPPPQGGGGGYIPYYQPPAGGGGGGGG 103
Query: 652 XXXPXTPXPGP 684
P P P P
Sbjct: 104 FNYPAPPPPNP 114
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 661 PXTPXPGPXXKTXXXGPPPPXKXKKXTPP 747
P P GP GPPPP K +PP
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/92 (27%), Positives = 25/92 (27%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
PPPP PP P PP PP G G P
Sbjct: 313 PPPP--------PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKG--- 361
Query: 652 XXXPXTPXPGPXXKTXXXGPPPPXKXKKXTPP 747
P P P P PPPP K PP
Sbjct: 362 ---PSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +3
Query: 708 PPPPXKKXKXNPPPXXXXXXXPXEKXTRXPLKTPXAXXXXXPXP 839
PPPP K PPP P + P P A P P
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 708 PPPPXKKXKXNPPPXXXXXXXPXEKXTRXPLKTPXAXXXXXPXP 839
PPPP K PPP P K P P P P
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 670 PXPGPXXKTXXXGPPPPXKXKKXTPPXXXXG 762
P P P K PPPP K PP G
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKG 343
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 5.1
Identities = 25/98 (25%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXP---PXXXXGHXXFXP---PGGXNXXXXKXGXTPSXX 633
P PP K PP + P P P + P P + TP+
Sbjct: 213 PTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPY 272
Query: 634 XXXXXXXXXPXTPXPGPXXKTXXXGPPPPXKXK-KXTP 744
TP P P T PPP K + K TP
Sbjct: 273 TPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTP 310
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/98 (24%), Positives = 26/98 (26%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
P PP PP S PP G PP P+
Sbjct: 1087 PLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIG 1146
Query: 652 XXXPXTPXPGPXXKTXXXGPPPPXKXKKXTPPXXXXGG 765
P P G PPPP + TPP GG
Sbjct: 1147 GVPPPPPVGGLGGPP---APPPPAGFRGGTPPPNAHGG 1181
>02_02_0338 + 9105725-9106581,9106950-9107091
Length = 332
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 705 RPPPPXKKXKXNPPPXXXXXXXPXEKXTRXPLKTP 809
+PPPP K K P P T PLK P
Sbjct: 4 KPPPPPTKPKPKPATAAQPAPAPATARTTPPLKKP 38
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 661 PXTPXPGPXXKTXXXGPPPPXKXKKXTPP 747
P P P P PPPP KK PP
Sbjct: 358 PPPPPPPPPPPPPPRPPPPPPPIKKGAPP 386
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 705 RPP---PPXKKXKXNPPPXXXXXXXPXEKXTRXP-LKTPXAXXXXXPXPS 842
RPP PP + K PPP P TR P +K P P P+
Sbjct: 166 RPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPT 215
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 676 PGPXXKTXXXGPPPPXKXKKXTPP 747
P P K PPPP K K +PP
Sbjct: 69 PPPLQKAPKVSPPPPQKPDKVSPP 92
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 667 TPXPGPXXKTXXXGPPPPXKXKKXTPP 747
+P P P K+ PPP K K +PP
Sbjct: 101 SPPPPPPQKSAKVSPPPAAKPPKLSPP 127
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.0
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Frame = +1
Query: 472 PPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXX 651
PPPP G PP + P PP H PP G
Sbjct: 276 PPPPA------GPPPPAPP--PLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAH 327
Query: 652 XXXPXTPXPGPXXKTXXX--GPPPP 720
P P P P GPPPP
Sbjct: 328 PAAPAPPPPAPSPSAAGAGSGPPPP 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.145 0.508
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,768
Number of Sequences: 37544
Number of extensions: 340892
Number of successful extensions: 1066
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -