Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J23
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.65 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.65 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.65 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +1

Query: 427 PXPGXXXKFXXGKXXPPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGG 588
           P P        G   PPPPG      G PP        PP          PPGG
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
 Frame = +1

Query: 511 PPXSXXXXPXP--PXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXXXXXPXTPXPGP 684
           PP +    P P  P    G     PPGG           P            P  P P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP-P 765

Query: 685 XXKTXXXGPPPPXKXKKXTPPXXXXG 762
                   PPPP   K   PP    G
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPG 791


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +1

Query: 427 PXPGXXXKFXXGKXXPPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGG 588
           P P        G   PPPPG      G PP        PP          PPGG
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
 Frame = +1

Query: 511 PPXSXXXXPXP--PXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXXXXXPXTPXPGP 684
           PP +    P P  P    G     PPGG           P            P  P P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP-P 765

Query: 685 XXKTXXXGPPPPXKXKKXTPPXXXXG 762
                   PPPP   K   PP    G
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPG 791


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +1

Query: 427 PXPGXXXKFXXGKXXPPPPGXKXXXFGXPPXSXXXXPXPPXXXXGHXXFXPPGG 588
           P P        G   PPPPG      G PP        PP          PPGG
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
 Frame = +1

Query: 511 PPXSXXXXPXP--PXXXXGHXXFXPPGGXNXXXXKXGXTPSXXXXXXXXXXXPXTPXPGP 684
           PP +    P P  P    G     PPGG           P            P  P P P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP-P 348

Query: 685 XXKTXXXGPPPPXKXKKXTPPXXXXG 762
                   PPPP   K   PP    G
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPPG 374


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +1

Query: 427 PXPGXXXKFXXGKXXPPPPGXKXXXFG-XPPXSXXXXPXPPXXXXGHXXFXPP 582
           P P    ++  G   PPPP       G  PP      P PP    GH    PP
Sbjct: 335 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP---SGHGMIPPP 384


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +1

Query: 427 PXPGXXXKFXXGKXXPPPPGXKXXXFG-XPPXSXXXXPXPPXXXXGHXXFXPP 582
           P P    ++  G   PPPP       G  PP      P PP    GH    PP
Sbjct: 345 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP---SGHGMIPPP 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.145    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,188
Number of Sequences: 27780
Number of extensions: 222543
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)