Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J22
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    32   0.47 
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    32   0.47 
U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
            C48B4.4c protein.
          Length = 1704

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 377  LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 258
            L F+F+F+ F++ Y  L  +I  + LYF      IY V F
Sbjct: 1184 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1223


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
            C48B4.4b protein.
          Length = 1691

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 377  LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 258
            L F+F+F+ F++ Y  L  +I  + LYF      IY V F
Sbjct: 1171 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1210


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
            C48B4.4a protein.
          Length = 1689

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 377  LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 258
            L F+F+F+ F++ Y  L  +I  + LYF      IY V F
Sbjct: 1169 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1208


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
            cassette transporter protein.
          Length = 1704

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 377  LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 258
            L F+F+F+ F++ Y  L  +I  + LYF      IY V F
Sbjct: 1184 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1223


>U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical
           protein M02E1.1b protein.
          Length = 688

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 475 KLLDRQKKLPN*K*TTRPLKILNWQKK*RILMKTT*IL 588
           KLL +QK+ P  +  TR   + NW+KK R   KT  IL
Sbjct: 373 KLLKKQKEFPKARRFTRNF-LYNWEKKNRYFKKTDLIL 409


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
           protein M02E1.1a protein.
          Length = 1077

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 475 KLLDRQKKLPN*K*TTRPLKILNWQKK*RILMKTT*IL 588
           KLL +QK+ P  +  TR   + NW+KK R   KT  IL
Sbjct: 373 KLLKKQKEFPKARRFTRNF-LYNWEKKNRYFKKTDLIL 409


>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 383 GILYFVFLFIIFNYCYMSLFRIIFCFVLYFIYR 285
           GI+  +  FI  ++  M LF I+ CF++++IYR
Sbjct: 150 GIIITLISFITPDH--MKLFMIVVCFLIWWIYR 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,620,078
Number of Sequences: 27780
Number of extensions: 253142
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)