Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J20
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.8  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   5.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   5.0  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   8.7  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 128 ILSCLDPINPQLKGDPRPXVPTIYNNLNLKEF 33
           + S  + +NP +  +P P   T+ N++NL +F
Sbjct: 817 LFSSFNSVNPLISLEPNPLNRTLNNSVNLTDF 848


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 125 LSCLDPINPQLKG-----DPRPXVPTIYNNLNLKEFHI 27
           L  ++P+NP ++       P+  VPT+  N+ L  FH+
Sbjct: 278 LDIMNPVNPDIQDYEFNESPKLSVPTVEMNMILTSFHL 315


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 107 INPQLKGDPRPXVPTIYNNLNLKEF 33
           +N  L  DP P +PTIY+ ++ K++
Sbjct: 309 VNTPLIFDPWPELPTIYSAIHTKDY 333


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/71 (23%), Positives = 25/71 (35%)
 Frame = +2

Query: 491 QKASKRXXXRKXARXAGVXPXGSAPPXRASQKXDAXXQXVXKPXQDYXXYQAFPPGXPPR 670
           +K  K     K ++ A V     AP      K +   +   K  +D    +   P  PP+
Sbjct: 214 KKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKDKKEKAPKEPPK 273

Query: 671 XXXPVPDPAXF 703
              PVP    F
Sbjct: 274 AATPVPSMIDF 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,877
Number of Sequences: 5004
Number of extensions: 36464
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)