Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J18
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   144   6e-35
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  144 bits (350), Expect = 6e-35
 Identities = 61/89 (68%), Positives = 75/89 (84%)
 Frame = +1

Query: 88  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 267
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 268 KRTVAGGAWVFSTTAASSCRSAVRRLREV 354
            + VAGGA+V+ T  A++ RS +RRLR++
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIRRLRDL 89


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 45  LFFSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 215
           L +S   C  + Y+  + +QK +N W+  H +RCL   N     +N T+    L LW
Sbjct: 403 LSYSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 8   FITTHYRESLRFFVFLCQLLYRRGLPKWPNVPKRLELLANMAHVTVP 148
           F++ H  + L  F+F    ++  G  KWPN  +  E  A  A +  P
Sbjct: 61  FLSNHQLKKLTHFIFTSISIFPNGTIKWPNC-ENFESYARKAKMDNP 106


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 184 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 267
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,424
Number of Sequences: 27780
Number of extensions: 240759
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)