Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J17
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 181 1e-46
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 7e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 41 2e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.12
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 4.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 6.1
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 8.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 8.1
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 181 bits (440), Expect = 1e-46
Identities = 94/135 (69%), Positives = 107/135 (79%), Gaps = 3/135 (2%)
Frame = +2
Query: 275 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 445
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 446 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 625
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 626 VVDLLAPYAKEEXLG 670
VVDLLAPYA+ +G
Sbjct: 186 VVDLLAPYARGGKIG 200
Score = 39.1 bits (87), Expect = 8e-04
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 738 HGGYSVFAGVXXRTREGND 794
HGGYSVF GV RTREGND
Sbjct: 224 HGGYSVFTGVGERTREGND 242
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 59.3 bits (137), Expect = 7e-10
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +2
Query: 356 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 532
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 533 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 655
I T + + +AP + + E + TG+K +D + P +
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGR 189
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 41.1 bits (92), Expect = 2e-04
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +2
Query: 347 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 523
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 524 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKEEXL 667
+ + I+ +E++ TGI +D L A+ + +
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKI 166
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 621 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 442
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 441 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 346
+ST C T S+P T +P TS++
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 531 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 397
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 4.6
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 338 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 517
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 518 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 652
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 156 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 266
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 407 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 523
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 537 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 394
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,558
Number of Sequences: 5004
Number of extensions: 66147
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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