Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J17
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 220 9e-58
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 64 9e-11
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 64 9e-11
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 46 5e-05
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 44 1e-04
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 42 8e-04
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 34 0.15
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.62
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 3.3
Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 5.7
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 5.7
AC006810-7|AAK84622.2| 333|Caenorhabditis elegans Serpentine re... 28 7.6
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 220 bits (538), Expect = 9e-58
Identities = 105/132 (79%), Positives = 117/132 (88%)
Frame = +2
Query: 275 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 454
DVQF++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P
Sbjct: 81 DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140
Query: 455 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 634
I+IPVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV+MSV+QEILVTGIKVVD
Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVD 200
Query: 635 LLAPYAKEEXLG 670
LLAPYAK +G
Sbjct: 201 LLAPYAKGGKIG 212
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 738 HGGYSVFAGVXXRTREGND 794
HGGYSVFAGV RTREGND
Sbjct: 236 HGGYSVFAGVGERTREGND 254
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 694 KTVLIMELINNVA 732
KTVLIMELINNVA
Sbjct: 221 KTVLIMELINNVA 233
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 64.5 bits (150), Expect = 9e-11
Identities = 30/100 (30%), Positives = 54/100 (54%)
Frame = +2
Query: 356 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 535
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 536 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 655
+ + + +AP + +E +VTG+K VD L P +
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGR 162
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 64.5 bits (150), Expect = 9e-11
Identities = 30/100 (30%), Positives = 54/100 (54%)
Frame = +2
Query: 356 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 535
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 536 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 655
+ + + +AP + +E +VTG+K VD L P +
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGR 189
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 45.6 bits (103), Expect = 5e-05
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +2
Query: 368 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTD 544
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+ +
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130
Query: 545 KTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKEEXL 667
I+ + +E++ TGI +D++ A+ + +
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKI 171
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 500 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 655
V+G PID +GPI + + + +AP + +E +VTG+K VD L P +
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGR 154
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +2
Query: 443 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 622
+G R PV + LGRI N G+PID+ P+ + I+ + + +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 623 KVVDLLAPYAKEEXL 667
+D++ A+ + +
Sbjct: 169 SAIDVMNSIARGQKI 183
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 33.9 bits (74), Expect = 0.15
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Frame = -2
Query: 702 YSFAHTXSAKQPNXSSFA*GASRSTTFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGPR 523
YS+ + A +P A + TF PVT +S + +T + + + P
Sbjct: 444 YSYGYEGGANKPTVV-LAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPA 502
Query: 522 S-SIGSPITL-MMRPRV---SAPTGIRMGEPESSTGCPRTKPSVPS 400
+ + +P T+ M P + P G P + T P TKP+VPS
Sbjct: 503 NPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPS 548
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 407 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 523
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 401 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 577
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 578 FVDMSV 595
+++V
Sbjct: 210 HAELTV 215
>Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.5 protein.
Length = 233
Score = 28.7 bits (61), Expect = 5.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 687 CGQNCIDYGTDQQCCQ 734
C C+ Y TDQ+CC+
Sbjct: 168 CKSGCLGYNTDQECCR 183
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 28.7 bits (61), Expect = 5.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 687 CGQNCIDYGTDQQCCQ 734
C C+ Y TDQ+CC+
Sbjct: 168 CKSGCLGYNTDQECCR 183
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -2
Query: 588 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 409
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 408 VPSMAMVRTVFSP 370
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -2
Query: 588 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 409
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 408 VPSMAMVRTVFSP 370
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
>AC006810-7|AAK84622.2| 333|Caenorhabditis elegans Serpentine
receptor, class t protein40 protein.
Length = 333
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 174 PHSERDFSATDLTAKMPLPTRLIAPNIFKKSA-AQSGKWASRKNQILRNS 28
PH+ +FS LT + P R+I N FKK S + + K Q+ S
Sbjct: 199 PHTINNFSVVTLTCIVYTPFRIIIANQFKKLIHGDSPQLQNAKTQVFLQS 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,531
Number of Sequences: 27780
Number of extensions: 385409
Number of successful extensions: 1019
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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