Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J15
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    30   0.51 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   2.7  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   6.3  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.3  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    26   8.3  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
 Frame = +2

Query: 260 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 439
           GK + +++  + P   L +  DRI+A D +  + +  K  +  + +   F++LK   ++T
Sbjct: 18  GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLK-PHVQT 76

Query: 440 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK--RNPGVPEGF 571
             +              +   + + L KK +++PIE + R   TGS  K  +  G   G 
Sbjct: 77  HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWKEYQKQGTVHGL 136

Query: 572 RV 577
            V
Sbjct: 137 NV 138


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 526 NWLVPKKESWCTRRLQGSLLQNKRRS-LRMTQTTIPNGQRSKSFQP 660
           NW+ P+K    T R++    +N++ +  R+ +TT+PN      F P
Sbjct: 254 NWIKPEKN--LTVRVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSP 297


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 313 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 224
           +   P+L+ N+  L  L++NEK+  F++ N
Sbjct: 49  RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 850 ESESMTSAXTMLPSXSXSXXIFMSISAQSRRAQAFSKISNIRIVA 716
           E E++ S  T+  S      +  +  +  +  +AF +ISN+R++A
Sbjct: 329 EYETLVSTFTLSVSEHWEDLLRKATDSCQKELEAFEEISNLRVLA 373


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 389 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEG 568
           QTN ++ + +     K    KIA  T  L K+ +  P+  ++ +L      +++  VPE 
Sbjct: 29  QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEV 88

Query: 569 FRVHSSK 589
             +   K
Sbjct: 89  SELEKDK 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,529,984
Number of Sequences: 5004
Number of extensions: 74301
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)