Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J14
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 118 1e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 4e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 4e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 5e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 51 3e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 2e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 42 1e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 41 3e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 40 6e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 8e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.002
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 38 0.002
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 38 0.002
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.17
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 30 0.39
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 30 0.51
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 29 0.67
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 1.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 1.2
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 1.6
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 2.7
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 2.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 4.8
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.8
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.3
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 26 6.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.3
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 8.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 8.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 118 bits (284), Expect = 1e-27
Identities = 51/105 (48%), Positives = 71/105 (67%)
Frame = +1
Query: 307 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 486
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 487 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TG K
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGK 172
Score = 58.0 bits (134), Expect = 2e-09
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +2
Query: 692 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 808
I LVLAPTRELA QIQQ FG +S +RNTCV+GG P+
Sbjct: 197 IVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPR 235
Score = 46.8 bits (106), Expect = 4e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +3
Query: 600 SPNGSGKTLAYILPAIVHINNQPPIRRGDGRLL 698
S GSGKTL+Y LPAIVHIN QP + GDG ++
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +1
Query: 322 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 498
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 499 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
+ ++GY++PT IQAQ P SG++++GVA+TG K
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGK 468
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 609 GSGKTLAYILPAIVHINNQPPIRRGDG 689
GSGKT+A++LP HI +Q P++ G+G
Sbjct: 465 GSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 692 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 814
IA+++ PTRELA QI + F +R C +GGAP ++
Sbjct: 493 IAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKD 533
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.8 bits (131), Expect = 4e-09
Identities = 22/68 (32%), Positives = 43/68 (63%)
Frame = +1
Query: 418 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 597
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 598 VAQTGPAK 621
+A+TG K
Sbjct: 292 IAETGSGK 299
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 799
A+VLAPTRELAQQIQ F R V GG
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 609 GSGKTLAYILPAIVHINNQPPIRRGDGRL 695
GSGKT A+I+P I+ I+ PP+ + L
Sbjct: 296 GSGKTAAFIIPLIIAISKLPPLTESNMHL 324
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.4 bits (130), Expect = 5e-09
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +1
Query: 409 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 579
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 580 GKNLVGVAQTGPAK 621
G+++VG+A+TG K
Sbjct: 202 GRDVVGIAETGSGK 215
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 698 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 814
LV++PTRELA Q + + ++ V+GGAPK E
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSE 278
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.8 bits (116), Expect = 3e-07
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +1
Query: 433 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 612
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 613 PAK 621
K
Sbjct: 217 SGK 219
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 698 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 811
L+LAPTREL QI + + F + S+VR V+GGA R
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIR 296
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTG K
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
Score = 33.5 bits (73), Expect = 0.041
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 799
A+VLAPTRELA QI + G + VR+ + GG
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGG 151
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 609 GSGKTLAYILPAIVHINNQP 668
GSGKT A+ LP I + N P
Sbjct: 93 GSGKTAAFALPVIQELWNNP 112
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TG K
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 698 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 799
L+L PTRELA Q VA + + GG
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGG 367
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +1
Query: 403 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 582
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 583 KNLVGVAQTGPAK 621
++++G A+TG K
Sbjct: 127 RDVLGAAKTGSGK 139
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 698 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 811
++++PTRELA QI VA + + V GGA +R
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRR 202
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 40.7 bits (91), Expect = 3e-04
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TG K
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
Score = 29.1 bits (62), Expect = 0.89
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 582 KEFSWRSPNGSGKTLAYILPAIVHINNQPPI---RRGDGRLLW--SWRLPES*HNKFSKL 746
K+ ++ GSGKT AY++P + + Q I +RG LL + L + +N KL
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Query: 747 LQILDTHLMFV 779
H+ F+
Sbjct: 112 TAFCSKHIRFI 122
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQV 745
AL+L PTRELAQQ+ V
Sbjct: 91 ALLLVPTRELAQQVYNV 107
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TG K
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
Score = 34.3 bits (75), Expect = 0.024
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 814
AL+L+P RELA Q +V DF + +R+ + GG E
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEE 181
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 609 GSGKTLAYILPAIVHINN 662
GSGKT A+++P I H+ +
Sbjct: 116 GSGKTAAFVIPMIEHLKS 133
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
F+ N +++ V G+K+ TP+QA P+ + K+LV A TG K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGK 51
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 582 KEFSWRSPNGSGKTLAYILPAIVHINNQPPIRRGDGRLL 698
K+ + GSGKTLAY+LP + + G G L+
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALI 77
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAAD 754
AL++APTRELA QI V +
Sbjct: 75 ALIVAPTRELATQIFNVTKE 94
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 698 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 814
L+L PTRELA Q QV G V+ GG R+
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRD 154
Score = 27.1 bits (57), Expect = 3.6
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +3
Query: 597 RSPNGSGKTLAYILPAIVHINNQ 665
R+ NG+GKT A+++P++ ++ +
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTK 109
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 814
AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +1
Query: 409 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 588
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 589 LVGVAQTGPAK 621
++ AQ+G K
Sbjct: 61 VIAQAQSGTGK 71
Score = 33.1 bits (72), Expect = 0.055
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 796
AL+L+PTRELA QIQ V G H + + C+ G
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 799
AL+L PTRELA QI + A G +++ + GG
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGG 112
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGPAK 621
F + ++ +K + EPT IQ + G+N +G A+TG K
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGK 57
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 609 GSGKTLAYILPAIVHINNQPPIRRGDGRLLWSWRLPE 719
GSG+TLA + P ++ +N + + LW+W L E
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKR 811
A+++APTREL QQI VA + + ++ + V GG K+
Sbjct: 219 AVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKK 260
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 609 GSGKTLAYILPAIVHINNQP 668
GSGKTLAY+LP + + P
Sbjct: 188 GSGKTLAYLLPIVQRLIRLP 207
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVR 778
A+ LAP+RELA+QI V + G + V+
Sbjct: 187 AICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 603 PNGSGKTLAYILPAIVHINNQPP 671
P G GK+L++++PA++ Q P
Sbjct: 1214 PTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 603 PNGSGKTLAYILPAIVHINNQPP 671
P G GK+L++++PA++ Q P
Sbjct: 1214 PTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 808
+++L+PTRELA QI + A + + +R + GG K
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSK 152
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 600 SPNGSGKTLAYILPAIVHINNQPP 671
+P GSGKT+AY+ P + + P
Sbjct: 90 APTGSGKTIAYLFPILQKLQLHVP 113
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQ 742
ALV+APTRELA QI Q
Sbjct: 195 ALVVAPTRELAHQICQ 210
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 709 RQDQSNRPSPLRIGGWL 659
RQ++ N+PS RI GWL
Sbjct: 161 RQNEENQPSARRIHGWL 177
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 537 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 412
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.8
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -3
Query: 573 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 394
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 393 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 226
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 225 IIAEFVASSKFGTTVSTAII 166
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 397 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 528
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 122 HLQLNPKNNHVLVTGII 172
HLQ +PK+N +L+TG +
Sbjct: 151 HLQFHPKDNELLLTGSV 167
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 397 PYEVEEYRNKHEVTVS 444
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 372 WIIKVFVERLE*NRIPIWASHVLPSREF 289
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 695 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 814
ALV++PTRELA Q + G + GG +E
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKE 153
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 603 PNGSGKTLAYILPAIV 650
P G GK+L Y LPA++
Sbjct: 542 PTGGGKSLCYQLPAVI 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,682
Number of Sequences: 5004
Number of extensions: 75778
Number of successful extensions: 268
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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