Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J14
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       63   4e-12
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    27   0.31 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    26   0.40 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 62.9 bits (146), Expect = 4e-12
 Identities = 29/64 (45%), Positives = 39/64 (60%)
 Frame = +1

Query: 430 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 609
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 610 GPAK 621
           G  K
Sbjct: 243 GSGK 246



 Score = 28.3 bits (60), Expect = 0.10
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 698 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 799
           ++++PTREL  QI Q    F   S ++    +GG
Sbjct: 277 VIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGG 310


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 788 HTCYEHKMCVQNLQQLAEFVVLTLW*APRPKQSTITSPNRRLVIYVHNCWQ 636
           H+ +EH    +++Q++  +    +W   R    T   PN  L ++  + WQ
Sbjct: 124 HSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNGTRQPPNNWLSVFWGSAWQ 174


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 537 TDAHSSSRLADSYVWKEFSWRSPNGSGKTLA 629
           +D+ +  +L + Y WK   +  PNG  K  A
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGYAKLAA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,302
Number of Sequences: 438
Number of extensions: 5088
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)