Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J13
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    36   4e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 36.3 bits (80), Expect = 4e-04
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +1

Query: 124  IFMNMEKRIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKG- 300
            +   ++  + + R+      V    +++ ++    GL     NLQIL L +  +  LKG 
Sbjct: 805  VLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLN----NLQILHLEDNRIRELKGF 860

Query: 301  -FPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSGNKI 420
             F  L  LR+L L +N I     LTFL   + L  L LSGN++
Sbjct: 861  EFERLSHLRELYLQNNLIGFIGNLTFLP-LRSLEILRLSGNRL 902



 Score = 27.5 bits (58), Expect = 0.17
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 247 TNLQILSLNNVGLTTLK-GFPTLPMLRKLELSDNRISNGLT-FLSGCKKLAHLNLSGNKI 420
           ++L+ L L+   LT++      L +L+ L+L +NRISN          +L  L L GN I
Sbjct: 431 SDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI 490

Query: 421 KDL 429
            +L
Sbjct: 491 GNL 493


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 510 VFNASNIIIE*VKI-LQILESFKRLQGF 430
           + N S+I+ E  +  LQ+LESFKR   F
Sbjct: 281 LINCSDILEEFERNRLQLLESFKRKVNF 308


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 100 SCSKC*FGIFMNMEKRIILERRGRD 174
           SC KC +GI M+    I+   +G D
Sbjct: 42  SCHKCKYGIAMSSACGIVQCAKGPD 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,158
Number of Sequences: 438
Number of extensions: 2886
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)