Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_J11
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 45 1e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 45 2e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 2e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 3e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 39 8e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.004
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.008
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.010
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.010
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.013
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 35 0.013
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.053
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.070
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.070
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 32 0.093
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.12
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 32 0.12
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.21
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.37
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.49
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.65
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 29 1.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.0
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.6
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 4.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.1
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 8.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 8.1
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 8.1
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +1
Query: 208 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDG 387
+ +++VG + A++ ++ D F YG + + + GF FVE ED RDA D V G
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQG 59
Query: 388 RTICGRRARVE 420
+ G R VE
Sbjct: 60 KEFMGSRIVVE 70
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 214 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAVRG 378
K+Y+ +L N + ++ + +G L + + +N GF F EF++P DAE A+ G
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 379 LDGRTICGRRARVEMS 426
LDG+ G + + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 211 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAVR 375
C VYVG++ ++ ++ D F GP+++ + + P G+ F E+ DP A AVR
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 376 GLDGRTICGRRARVE 420
L+ RR RV+
Sbjct: 65 NLNNYDAGTRRLRVD 79
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAVRGLD 384
V+VG+L + ++ L +AF +G + +V + R +AFVEF++P DA++A+ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 385 GRTICGRRARVEMSN 429
+C R RV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Frame = +1
Query: 175 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---------PPGF 327
+++++ + D +V+VG L + K E+ F G +R V + P G
Sbjct: 32 EQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGI 91
Query: 328 AFVEFEDPRDAEDAVRGLDGRTICGRRARVE 420
AFV F + D + A+ L+G+T+ R V+
Sbjct: 92 AFVTFNNQEDVDKAIETLNGKTLDDREIVVQ 122
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 381
+++ L + + ++E F+ YGP+ + V RN G+AFV FE RD + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 382 DGRTICGRRARVEM 423
G + GRR V++
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.1 bits (87), Expect = 8e-04
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 193 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAFVEFEDPRDA 360
MSR +YV + EL F +GPL + R FAFVE+ED RDA
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDA 60
Query: 361 EDAVRGLDGRTI 396
EDA + GR +
Sbjct: 61 EDAYYEVHGRRL 72
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 381
+YVG+L + ++ L + F+ GP+ ++ V R+ G+A+V F + D E A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 382 DGRTICGRRARVEMS 426
+ I GR R+ S
Sbjct: 142 NYTLIKGRPCRIMWS 156
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 211 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAVR 375
C V+VG L N L F YG + V + G+ +V+FE P A+ AV
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Query: 376 GLDGRTICGRRARVEMSN 429
+ I GR +++SN
Sbjct: 323 ANGTKEIDGRMVNLDLSN 340
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 214 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAVRG 378
++++ +L + ++ +L+ F +G L V + NP GFA+++F D DA A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 379 LDGRTICGRRARV 417
LD + GR V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 322 GFAFVEFEDPRDAEDAVRGLDGRTICGRRARVEMSN 429
GF FVEF+D A A+ ++G + G + +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 381
V+VG++ + S+ ++ + F+ GP++ + +P G+ F EF D AVR L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 382 DGRTICGRRARVE 420
+ + R+ RVE
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 214 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAVRGL 381
+++VG+LGN+ + L AFS Y L V R+ GF FV F+D A R
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 382 DGRTICGRRARV 417
+G+ I R ++
Sbjct: 91 NGKYIGSRPVKL 102
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAVRGL 381
++V +L + +L + FS GP+++ V NP G+ FV F DA+ A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 382 DGRTICGRRARVEMS 426
+ + GR R++ +
Sbjct: 67 KNKKLHGRILRLDFA 81
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 208 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAVR 375
DC +YVG+L S L D F+ G + +A P G F V+FE+ DA ++
Sbjct: 280 DC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIE 338
Query: 376 GLDGRTICGR 405
L+G GR
Sbjct: 339 KLNGYRYGGR 348
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +1
Query: 217 VYVGDLGNNASKPEL----EDAFSYYGPLRNVWVARN--PPGFAFVEFEDPRDAEDAVRG 378
++V L ++ S+ EL +D F +GPL +V V ++ ++FV+F++ DA A+
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSE 140
Query: 379 LDGRTICGRRARVE 420
+ GR R+E
Sbjct: 141 AQNTILDGRHIRIE 154
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +1
Query: 208 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV----------ARNPPGFAFVEFEDPRD 357
+ +YVG+L + +L + F +G + +++P FAF+ FE+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 358 AEDAVRGLDGRTICGRRARVEMSN 429
A++A+ L+G + G +VE ++
Sbjct: 79 ADNAIASLNGSSFQGNTLKVEYTH 102
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGL 381
V++G+L ++ + E+E+AF +G + ++ + + AFV F + RDA VR L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.1 bits (77), Expect = 0.013
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAFVEFEDPRDAEDAVRGL 381
VYVG+L ++ ++ FS G +R + + + P GF FVE+ + +DA D+++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 382 DGRTICGRRARVEMSN 429
++ R R ++ +
Sbjct: 94 SRTSLDERIIRADLDH 109
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 35.1 bits (77), Expect = 0.013
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 322 GFAFVEFEDPRDAEDAVRGLDGRTICGRRARVE 420
G AF F P +A+ V+ L+G I GRR RVE
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.1 bits (72), Expect = 0.053
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAVRGL 381
VYVG++ + + EL+ F+ G + V + +P GFA++EF +P +A+ L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-L 115
Query: 382 DGRTICGRRARV 417
+G + R +V
Sbjct: 116 NGSMLHERPLKV 127
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 32.7 bits (71), Expect = 0.070
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 322 GFAFVEFEDPRDAEDAVRGLDGRTICGRRARVE 420
G AF F P +A+ V+ L+G I GRR RVE
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.070
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +1
Query: 181 ASSTMSRYGDCK-VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 342
+SS Y D +Y+G+L + ++ ++ FS +G ++ + R+ GFAF+++
Sbjct: 20 SSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
Query: 343 EDPRDAEDAVRGLDGRTICGRRARVE 420
ED R AV + + R RV+
Sbjct: 80 EDQRSTVLAVDNMTNVKLLDRLVRVD 105
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 32.3 bits (70), Expect = 0.093
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 500 RCYDCGDRGHCARDC 544
RCY+CG+ GH AR+C
Sbjct: 18 RCYNCGENGHQAREC 32
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +2
Query: 461 HLXSRLP--PRPYDD-RCYDCGDRGHCARDC 544
HL P P P CY CG GH ARDC
Sbjct: 68 HLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 461 HLXSRLPPRPYDDRCYDCGDRGHCARDC 544
H S + CY CG GH RDC
Sbjct: 46 HKASECTEPQQEKTCYACGTAGHLVRDC 73
Score = 29.1 bits (62), Expect = 0.86
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 503 CYDCGDRGHCARDC 544
CY CG GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +2
Query: 422 CLMGVAVMAAG-VHHLXSRLPPRPYDDRCYDCGDRGHCARDC 544
C MGV + G + H CY C GH A +C
Sbjct: 131 CTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 262 EDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTICGRRARVEM 423
E+ YG + ++ V N G FV+FE+ AE A+ GL R GR + +
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 352 VDLRIQQMRSLEDFLQPTHSSV-DHNMKRHLQVQVY*HYSPNLQHKLCSHHS 200
+D +++R+ D LQ H ++ DHN Q+Q+Y Y N + ++ HS
Sbjct: 595 LDALYERIRAERDALQDVHRAICDHNEYLQTQLQIYGSYLNNARSQIKPSHS 646
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.21
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 199 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAE 363
R D +Y+G+L + L + GP+ N+ + R + GF F EF +D E
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 364 DAVRGLDGRTICGRRARVEMSN 429
A + L+ + G+ RV ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRAS 88
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.37
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +1
Query: 223 VGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTICG 402
V ++ ++ L F YG L V + G A VEF D DA A L+G I G
Sbjct: 878 VTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG-AVVEFLDIHDAGKASLALEGHEIGG 936
Query: 403 RRARVEMSN 429
R + N
Sbjct: 937 RLLHITTVN 945
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTI 396
+YV +L S + FS YG ++++W+ +P A V +E A A L R +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYESLSSAIVARDALHNRPV 60
Query: 397 CGRRARVEM 423
V++
Sbjct: 61 FENHGPVQV 69
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.65
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +1
Query: 166 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFA 330
L + S M + V+VG+L A + L F G + V + R+P GFA
Sbjct: 255 LRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFA 314
Query: 331 FVEFEDPRDAEDAVRGLDGRTICGRRARV 417
+++F+D + A+ + + GR R+
Sbjct: 315 YIQFKDTMGVDKALLLNEKKMPEGRTLRI 343
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFEDPRDAEDAVRGLDGR 390
+YVG+L N + +L AFS R + + N P FVEFE+ A A+ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQGA 662
Query: 391 TI 396
+
Sbjct: 663 AL 664
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTI 396
++VG+L + S + FS YG + ++ + + AF+ F+ A+ + L+G+ I
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKRI 647
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 217 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 345
+YVG L + + ++ FS +GP+ + ++RN +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 235 GNNASKPELEDAFSYYGPLRNVWVARNPPGFAFV-EFEDPRDAEDAVRGLDGRTI 396
G+ S +L+ +GPL + R+ + EF D RDA A+ LDGR I
Sbjct: 300 GSVLSILQLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRII 354
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 503 CYDCGDRGHCARDC 544
C CG GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 473 RLPPRPYDDRCYDCGDRGHCARDC 544
R+ R D C+ C +GH +DC
Sbjct: 69 RINQRNRDKFCFACRQQGHIVQDC 92
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 244 ASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAV 372
A++ ++ED F+ +GP++N+ + + G+A +E+ A+ AV
Sbjct: 21 ATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 232 NLQHKLCSHHSVTSWTMLFGWSI-NILMRFITKPL 131
+L + + + ++V SW MLF W I IL+ K +
Sbjct: 247 HLTNPIWNQYTVGSWFMLFAWCIYGILLSIFFKEI 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,497
Number of Sequences: 5004
Number of extensions: 56803
Number of successful extensions: 164
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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