Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J10
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0618 - 9891151-9891262,9891912-9891956,9892463-9892473,989...    32   0.69 
04_01_0486 - 6404315-6404333,6404803-6405260                           30   2.1  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.8  
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    29   6.5  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.5  
12_01_0041 + 330098-330568                                             28   8.5  
11_01_0042 + 313700-314170                                             28   8.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  

>03_02_0618 -
           9891151-9891262,9891912-9891956,9892463-9892473,
           9892878-9892940
          Length = 76

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 581 EVAKPDRTIKIPGVSPWKLPRALS--CSDPAAYGYCPVRLSPFXKR 712
           ++A P R  K+     W   RA    C  PA Y YCP+RL P  KR
Sbjct: 25  KIAVPVRC-KVCTRPAWTARRAAMKCCFMPAVYKYCPLRLIPLRKR 69


>04_01_0486 - 6404315-6404333,6404803-6405260
          Length = 158

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = -3

Query: 695 KGGQDSIRKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*ASIFVMLVRGAEPMEKRQQ 516
           +GG    R R+GR R A  G  R +         VSPP     +  +   G     +R +
Sbjct: 53  RGGASGGRGRRGRQRAAQGGGGRQRARGGGEVAVVSPPGRSPPLRQIWQEGRRRQGRRAR 112

Query: 515 RGLFTVPGLLLAFCSHVLS 459
           RGL    G L+  C   L+
Sbjct: 113 RGLVVAGGGLVRRCGGELA 131


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 517 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 663
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 629 WKLPRALSCSDPAAYGYCP 685
           W   RA SCSDPAA G  P
Sbjct: 2   WLATRASSCSDPAAAGLVP 20


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 349 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 504
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>12_01_0041 + 330098-330568
          Length = 156

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 640 SCALLFRPCRLRILSCPPFSLXEAWRFLIAHAV 738
           SC LL R C    +  P F   EA RF + H V
Sbjct: 12  SCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRV 44


>11_01_0042 + 313700-314170
          Length = 156

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 640 SCALLFRPCRLRILSCPPFSLXEAWRFLIAHAV 738
           SC LL R C    +  P F   EA RF + H V
Sbjct: 12  SCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRV 44


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,448,829
Number of Sequences: 37544
Number of extensions: 443790
Number of successful extensions: 1362
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)