Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_J10
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    30   1.9  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    30   1.9  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    30   1.9  

>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +1

Query: 448 GITQERTCE-QKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRF 624
           GIT  R  E QK  +     K  + W+ S   AP +       + R   T +D ++    
Sbjct: 237 GITVIRQDEVQKRLRYTKLAKTMKRWKLSKHGAPSSIAISNSEENRLNSTPEDDEEEEEI 296

Query: 625 PLEAPSCALLFRPCRLRILSCPPFSLXEAWRF 720
             + P  + L       ILS   F L E W F
Sbjct: 297 HQDPPVLSTLIATVAWIILSAAVFCLFEDWTF 328


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +1

Query: 448 GITQERTCE-QKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRF 624
           GIT  R  E QK  +     K  + W+ S   AP +       + R   T +D ++    
Sbjct: 237 GITVIRQDEVQKRLRYTKLAKTMKRWKLSKHGAPSSIAISNSEENRLNSTPEDDEEEEEI 296

Query: 625 PLEAPSCALLFRPCRLRILSCPPFSLXEAWRF 720
             + P  + L       ILS   F L E W F
Sbjct: 297 HQDPPVLSTLIATVAWIILSAAVFCLFEDWTF 328


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +1

Query: 448 GITQERTCE-QKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRF 624
           GIT  R  E QK  +     K  + W+ S   AP +       + R   T +D ++    
Sbjct: 237 GITVIRQDEVQKRLRYTKLAKTMKRWKLSKHGAPSSIAISNSEENRLNSTPEDDEEEEEI 296

Query: 625 PLEAPSCALLFRPCRLRILSCPPFSLXEAWRF 720
             + P  + L       ILS   F L E W F
Sbjct: 297 HQDPPVLSTLIATVAWIILSAAVFCLFEDWTF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,821
Number of Sequences: 27780
Number of extensions: 336618
Number of successful extensions: 868
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)